Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 0.0e+00 1211.4 621 100.0
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.3e-252 875.5 632 74.4
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.6e-251 872.1 635 73.1
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 6.0e-248 860.9 639 72.3
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.5e-246 855.5 639 71.8
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 1.1e-244 850.1 632 72.5
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.8e-244 849.4 632 72.3
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.1e-241 840.1 637 71.9
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.4e-241 839.7 635 71.5
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.0e-239 833.6 632 71.8
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.0e-239 833.6 626 71.6
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 6.2e-237 824.3 646 70.0
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 7.6e-235 817.4 636 71.2
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 9.9e-235 817.0 640 70.0
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.6e-232 809.7 634 69.9
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.0e-231 807.0 554 76.2
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 8.7e-231 803.9 636 69.7
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 7.8e-224 780.8 672 65.2
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.8e-212 743.0 629 64.7
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 3.4e-211 738.8 637 63.3
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 1.3e-210 736.9 637 63.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 4.2e-209 731.9 670 61.3
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.6e-208 729.9 627 63.3
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 6.0e-208 728.0 627 63.2
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 9.0e-204 714.1 637 63.1
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 3.5e-200 702.2 609 64.4
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 2.7e-192 676.0 659 57.2
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 6.7e-191 671.4 656 56.2
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 6.3e-189 664.8 627 56.5
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.2e-187 660.6 627 56.8
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 7.7e-187 657.9 663 56.3
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.2e-186 656.4 648 56.3
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.5e-186 654.8 648 56.3
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.9e-185 653.3 648 55.9
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 1.9e-185 653.3 662 56.5
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 4.7e-184 648.7 658 56.5
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 7.9e-184 647.9 604 58.4
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 1.0e-183 647.5 638 56.6
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.8e-183 646.7 701 53.1
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 6.7e-183 644.8 646 54.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 8.8e-183 644.4 594 58.2
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.5e-182 643.7 593 57.8
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 5.7e-182 641.7 593 58.3
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 5.7e-182 641.7 599 57.4
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 9.7e-182 641.0 604 58.1
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.8e-181 638.6 618 56.6
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 8.2e-181 637.9 676 52.1
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.1e-180 637.5 667 54.0
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 3.1e-180 636.0 659 54.6
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 3.1e-180 636.0 656 52.9
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 9.1e-180 634.4 604 55.8
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 9.1e-180 634.4 639 55.4
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.5e-179 633.6 665 54.0
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 5.9e-179 631.7 567 57.8
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.3e-178 630.6 673 52.9
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.3e-178 630.6 673 52.9
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.7e-178 630.2 653 55.6
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 5.0e-178 628.6 675 52.7
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 1.9e-177 626.7 681 51.8
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 3.2e-177 625.9 659 53.6
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.2e-177 625.9 664 52.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 4.2e-177 625.5 539 62.0
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.2e-176 624.0 657 54.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.1e-176 623.2 663 52.8
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.7e-176 622.9 673 52.9
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 3.6e-176 622.5 674 51.6
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 6.1e-176 621.7 663 52.9
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.0e-175 620.9 663 53.1
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 2.3e-175 619.8 670 52.8
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 5.2e-175 618.6 663 52.3
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.5e-174 617.1 662 52.7
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 9.7e-174 614.4 669 53.1
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.7e-173 613.6 670 52.4
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.7e-173 613.6 605 55.7
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 4.8e-173 612.1 667 52.0
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 2.4e-172 609.8 664 52.9
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 9.1e-172 607.8 669 51.7
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.9e-169 600.1 676 54.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 5.5e-169 598.6 674 53.0
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.2e-168 597.4 641 51.8
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 2.7e-168 596.3 630 55.2
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 2.3e-167 593.2 664 51.5
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 4.0e-167 592.4 652 50.6
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 8.8e-167 591.3 549 57.9
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 3.3e-166 589.3 650 53.7
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 7.5e-166 588.2 677 51.0
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 4.8e-165 585.5 656 51.8
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 2.4e-164 583.2 662 52.3
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 2.4e-164 583.2 653 53.6
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 3.1e-164 582.8 638 53.6
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 5.9e-163 578.6 593 54.8
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 2.2e-162 576.6 653 50.8
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.8e-159 567.0 654 50.2
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.7e-157 560.5 587 53.5
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 3.8e-154 549.3 673 49.9
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 2.3e-151 540.0 592 52.4
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.6e-150 536.6 502 58.2
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 3.4e-150 536.2 628 48.6
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 7.5e-150 535.0 536 53.4
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.7e-149 533.9 659 48.3
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 2.2e-149 533.5 596 50.7
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 2.2e-149 533.5 529 53.3
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.8e-149 533.1 615 49.4
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 1.1e-148 531.2 628 48.2
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 7.0e-148 528.5 606 49.7
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 7.0e-148 528.5 528 53.2
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 5.0e-146 522.3 588 49.5
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 4.0e-143 512.7 678 46.2
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 6.4e-141 505.4 573 49.2
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.1e-140 504.6 668 45.2
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 7.8e-139 498.4 564 49.6
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 8.6e-138 495.0 592 47.5
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 8.6e-138 495.0 678 46.2
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.6e-136 489.6 449 57.7
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 6.0e-131 472.2 698 41.7
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 2.3e-130 470.3 618 46.0
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 6.6e-130 468.8 612 45.3
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 4.3e-129 466.1 363 69.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 5.6e-129 465.7 314 77.1
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 8.9e-127 458.4 616 45.1
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.4e-118 429.9 650 43.1
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 2.4e-108 397.1 262 77.9
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 2.5e-105 387.1 617 40.2
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 3.4e-102 376.7 617 40.2
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 5.4e-100 369.4 628 41.7
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 5.3e-95 352.8 220 78.2
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.9e-84 317.8 531 38.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.7e-80 303.5 549 35.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 3.1e-79 300.4 503 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.2e-78 298.5 561 34.6
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 2.3e-74 284.3 419 37.7
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 2.0e-70 271.2 374 43.9
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 5.7e-57 226.5 130 84.6
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.1e-39 169.1 248 44.0
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 9.8e-17 92.8 538 22.1
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 2.2e-08 65.1 66 54.5
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 4.6e-06 57.4 52 59.6


User provided reference genes

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