Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 1.1e-165 586.6 303 100.0
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 6.9e-141 504.2 311 85.9
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 3.8e-139 498.4 310 85.2
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 8.5e-139 497.3 313 84.7
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 3.0e-136 488.8 317 83.0
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.9e-135 486.1 314 82.5
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.3e-134 481.1 316 80.7
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 4.5e-132 474.9 316 79.7
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 8.8e-128 460.7 313 79.9
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.1e-125 453.8 313 78.9
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.1e-125 453.8 313 78.9
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.4e-125 453.4 308 80.2
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.8e-125 453.0 309 78.3
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 2.2e-123 446.0 313 78.0
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 2.5e-122 442.6 315 77.1
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.0e-120 437.2 307 75.2
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.5e-119 433.3 309 76.4
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 5.7e-119 431.4 309 76.1
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 2.2e-118 429.5 295 77.6
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.2e-115 419.5 286 78.0
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 6.3e-102 374.8 301 67.1
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.1e-101 374.0 312 65.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 1.4e-101 373.6 301 67.8
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 4.5e-100 368.6 297 69.0
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 6.5e-99 364.8 304 66.1
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 5.5e-98 361.7 306 64.4
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 2.1e-97 359.8 301 66.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.8e-97 359.4 302 66.2
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 3.6e-97 359.0 305 64.6
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 6.8e-96 354.8 311 64.0
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 6.8e-96 354.8 320 63.1
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.2e-95 354.0 306 64.4
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 1.5e-95 353.6 311 62.7
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.5e-95 353.6 306 63.4
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 3.4e-95 352.4 313 61.7
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 4.4e-95 352.1 225 77.3
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 5.7e-95 351.7 301 63.5
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.7e-94 350.1 309 62.8
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 3.7e-94 349.0 224 75.4
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.4e-93 347.1 305 62.3
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.8e-93 346.7 307 61.2
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 2.4e-93 346.3 308 63.6
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 2.4e-93 346.3 297 64.0
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 2.4e-93 346.3 313 61.7
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 3.1e-93 345.9 305 61.6
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 9.2e-93 344.4 307 61.9
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.2e-92 344.0 307 61.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.0e-91 340.9 309 61.5
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 3.8e-91 339.0 202 81.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 3.8e-91 339.0 291 60.8
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.6e-91 338.2 300 62.7
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 8.6e-91 337.8 334 58.1
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.5e-90 337.0 228 71.5
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.5e-90 337.0 300 61.3
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.9e-90 336.7 300 62.7
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 2.5e-90 336.3 300 62.0
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.3e-90 335.5 274 67.2
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 7.3e-90 334.7 308 57.8
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 7.3e-90 334.7 310 60.3
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 9.5e-90 334.3 307 61.2
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 1.2e-89 334.0 308 60.4
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.2e-89 334.0 306 61.8
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.6e-89 333.6 300 62.3
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 3.6e-89 332.4 310 60.0
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 6.1e-89 331.6 310 59.4
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 6.1e-89 331.6 304 60.9
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.0e-88 330.9 295 60.7
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 1.4e-88 330.5 230 71.3
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 1.4e-88 330.5 302 60.9
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.2e-88 328.6 311 55.9
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.0e-87 326.6 312 58.7
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 2.6e-87 326.2 301 60.8
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 7.5e-87 324.7 222 70.7
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 7.5e-87 324.7 314 58.0
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 9.8e-87 324.3 217 71.9
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.7e-86 323.6 302 58.9
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 6.4e-86 321.6 218 70.2
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 1.8e-85 320.1 311 57.6
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 2.4e-85 319.7 314 58.0
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 4.1e-85 318.9 302 58.9
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 4.1e-85 318.9 298 58.4
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 5.4e-85 318.5 333 55.0
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 7.0e-85 318.2 299 59.5
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 7.0e-85 318.2 304 58.2
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 7.0e-85 318.2 301 58.1
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 9.2e-85 317.8 213 73.2
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-84 317.4 304 58.9
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.0e-84 316.6 299 58.2
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 2.0e-84 316.6 294 60.2
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.9e-84 315.1 311 55.9
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 2.3e-83 313.2 324 54.3
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.3e-83 313.2 300 60.0
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 3.0e-83 312.8 302 60.3
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 1.1e-82 310.8 211 70.1
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.5e-82 309.7 245 63.7
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 3.3e-82 309.3 306 57.5
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 3.3e-82 309.3 214 69.6
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 5.6e-82 308.5 314 57.6
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 9.5e-82 307.8 230 63.9
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 3.6e-81 305.8 312 56.4
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 3.6e-81 305.8 282 56.0
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 5.2e-80 302.0 304 55.6
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.2e-79 300.8 323 53.3
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.6e-79 299.7 287 58.2
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 7.5e-79 298.1 271 54.6
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 8.3e-78 294.7 282 58.9
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.9e-77 293.5 297 55.6
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 3.2e-77 292.7 195 69.7
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 5.4e-77 292.0 251 58.6
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.3e-70 270.8 262 59.9
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 7.1e-69 265.0 277 51.6
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 2.8e-65 253.1 238 51.3
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 8.1e-65 251.5 253 56.5
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.4e-64 250.8 325 50.8
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 4.0e-64 249.2 250 52.8
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 3.2e-61 239.6 187 65.2
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 3.2e-61 239.6 189 66.1
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.1e-60 236.9 201 58.7
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.1e-57 226.9 233 49.4
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 6.0e-44 182.2 167 53.9
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 2.5e-42 176.8 108 76.9
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.1e-40 171.4 136 64.7
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 3.5e-36 156.4 160 48.1
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.3e-35 153.7 217 43.8
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-31 141.4 83 75.9
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 1.5e-31 141.0 83 77.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 4.2e-29 132.9 203 35.5
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 9.3e-29 131.7 168 48.2
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.3e-27 127.1 125 50.4
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 9.7e-26 121.7 87 64.4
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 6.3e-25 119.0 68 77.9
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.2e-22 110.5 140 37.9
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 3.2e-21 106.7 203 30.5
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 2.4e-16 90.5 144 45.8
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.2e-15 88.2 56 71.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 4.5e-15 86.3 141 46.8
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 3.9e-11 73.2 60 68.3
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 2.0e-10 70.9 83 45.8
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.2e-09 67.4 131 39.7
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 4.8e-09 66.2 34 94.1
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.1e-08 65.1 116 39.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.8e-08 64.3 31 87.1
BolC9t57447H Brassica oleracea HOM05D042334 ORTHO05D027294 4.1e-08 63.2 59 61.0
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 4.1e-08 63.2 45 66.7
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 1.7e-06 57.8 28 85.7


User provided reference genes

Program Settings