Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 0.0e+00 1492.6 758 100.0
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 0.0e+00 1107.8 763 75.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 0.0e+00 1095.9 763 74.4
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 0.0e+00 1095.5 755 75.0
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 0.0e+00 1087.4 767 73.5
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 0.0e+00 1086.6 758 74.4
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 0.0e+00 1079.3 763 73.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 5.2e-312 1074.3 760 73.0
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 2.3e-310 1068.5 762 72.7
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.9e-302 1041.2 707 76.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 8.0e-279 963.8 773 66.6
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.4e-275 953.0 751 65.8
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.6e-271 939.5 810 63.7
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 3.6e-223 778.9 749 53.0
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 6.9e-222 774.6 746 53.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.3e-220 770.4 746 52.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 6.4e-220 768.1 747 52.5
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.1e-216 757.3 754 51.5
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.9e-216 756.5 702 53.4
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 9.6e-216 754.2 759 50.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 9.0e-214 747.7 756 50.1
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.6e-213 746.1 747 52.3
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 9.9e-213 744.2 768 50.9
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 7.1e-211 738.0 759 50.1
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.6e-210 736.9 758 51.1
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.7e-210 736.1 777 49.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 6.0e-210 734.9 763 50.3
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 7.9e-210 734.6 767 48.9
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 5.1e-209 731.9 769 50.8
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 6.7e-209 731.5 758 49.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.5e-208 730.3 761 49.7
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.3e-208 729.2 763 50.5
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 4.8e-207 725.3 762 50.7
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.1e-206 722.6 757 50.7
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 6.9e-206 721.5 703 52.1
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.1e-202 709.9 755 48.5
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.7e-202 709.5 752 48.8
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.5e-202 709.1 757 50.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 6.7e-201 704.9 761 51.0
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.5e-200 703.7 759 48.9
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 4.8e-199 698.7 750 48.8
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 3.1e-198 696.0 773 48.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.2e-197 694.1 756 50.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.0e-196 691.0 752 47.3
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.4e-195 687.2 766 47.7
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.5e-195 686.4 752 47.6
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 5.5e-195 685.3 749 46.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 7.9e-194 681.4 758 45.4
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 5.7e-192 675.2 798 45.7
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.6e-191 673.7 761 45.5
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 6.5e-188 661.8 758 46.0
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 9.4e-187 657.9 761 45.5
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.2e-186 657.5 762 46.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.6e-186 655.6 767 44.9
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 4.3e-184 649.0 897 42.1
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 2.2e-183 646.7 758 44.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 3.7e-183 646.0 758 43.4
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 4.8e-183 645.6 748 46.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.6e-181 639.8 764 46.5
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.0e-180 637.9 766 43.2
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.2e-179 632.9 754 43.6
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 4.2e-179 632.5 760 47.2
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 8.8e-177 624.8 757 43.5
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-176 622.1 762 45.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.7e-175 620.5 759 43.2
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.7e-175 619.4 757 44.1
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 3.7e-175 619.4 772 44.6
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 8.2e-175 618.2 708 45.5
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.4e-174 617.5 762 44.6
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 4.5e-173 612.5 778 43.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 7.7e-173 611.7 756 43.0
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.3e-172 610.9 767 44.2
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-171 607.4 760 43.9
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.5e-171 606.7 761 44.4
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.6e-170 602.8 794 43.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.0e-169 601.3 760 41.6
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.3e-166 589.0 766 44.1
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.2e-165 587.8 767 43.9
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.5e-160 570.9 661 47.0
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.2e-159 567.0 709 44.7
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.6e-154 550.8 761 41.5
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.5e-149 532.7 779 39.7
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.3e-147 526.2 809 38.1
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 8.0e-146 521.9 764 39.7
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.8e-130 470.3 701 38.8
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 1.4e-129 468.0 264 84.5
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 6.8e-129 465.7 618 41.6
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 2.9e-127 460.3 489 49.3
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.2e-122 444.9 455 51.6
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.1e-122 444.1 481 48.2
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 4.7e-122 443.0 751 36.6
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.3e-119 434.9 410 51.0
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 7.8e-117 425.6 636 38.7
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 5.8e-112 409.5 501 46.9
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 2.2e-111 407.5 665 36.2
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.1e-110 402.5 762 33.7
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.9e-107 394.4 332 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.5e-91 341.7 563 33.7
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 8.1e-90 335.9 592 36.0
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.0e-79 300.1 352 41.8
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 2.5e-70 271.2 347 43.8
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 3.6e-69 267.3 303 49.5
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 9.4e-54 216.1 307 42.0
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-53 215.7 306 37.9
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 8.0e-53 213.0 198 55.1
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 2.6e-51 208.0 286 38.8
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.4e-49 202.2 252 42.1
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.1e-49 200.7 289 37.7
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.0e-44 184.1 320 41.6
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.6e-37 161.0 401 27.9
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.4e-36 159.1 542 26.9
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.0e-36 157.9 328 31.1
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-35 154.1 242 40.9
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.7e-34 151.0 304 30.9
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-33 146.7 185 42.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 9.2e-33 146.4 256 32.4
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.6e-32 145.6 192 39.1
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.6e-31 140.2 240 35.4
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.5e-30 139.0 87 70.1
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.6e-30 137.1 330 32.1
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.0e-28 131.0 197 34.0
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 8.9e-28 129.8 171 42.1
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-25 122.1 240 31.2
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-25 120.9 277 30.3
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.3e-23 115.9 492 24.0
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 5.0e-23 114.0 188 36.2
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 6.6e-23 113.6 310 27.7
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 4.3e-22 110.9 179 34.1
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-21 109.4 157 40.8
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 2.8e-21 108.2 108 50.9
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-17 96.3 136 36.8
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-17 95.9 230 30.9
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.0e-16 92.0 442 23.8
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-14 85.9 76 50.0
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.5e-14 85.1 139 40.3
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 4.3e-14 84.3 64 59.4
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.8e-12 79.0 102 43.1
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.0e-12 77.8 86 51.2
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.9e-12 76.6 80 43.8
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.2e-11 76.3 179 31.8
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-11 76.3 173 32.9
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-11 75.9 86 48.8
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.6e-11 75.1 56 53.6
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 5.8e-11 73.9 62 50.0
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 5.8e-11 73.9 146 45.9
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 9.9e-11 73.2 87 46.0
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-10 71.6 86 46.5
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.9e-10 70.9 180 28.3
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.2e-09 68.2 81 48.1
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 7.1e-09 67.0 98 42.9
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-08 66.2 79 44.3
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.0e-08 63.9 42 64.3
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 7.8e-08 63.5 51 52.9
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-07 61.6 42 61.9
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.6e-07 60.5 164 28.0
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.9e-06 58.9 94 31.9
Lsat_1_v5_gn_2_13040 Lactuca sativa HOM05D001140 ORTHO05D000470 7.3e-06 57.0 75 40.0


User provided reference genes

Program Settings