Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 2.7e-197 691.8 351 100.0
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.1e-177 626.7 352 89.5
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.8e-177 625.9 351 88.6
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 2.0e-176 622.5 351 89.2
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 5.9e-176 620.9 351 88.0
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.9e-175 618.6 351 88.6
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 3.3e-171 605.1 353 86.1
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 4.8e-170 601.3 353 85.8
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.5e-168 596.3 353 85.6
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.3e-167 593.2 353 85.3
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.3e-167 593.2 353 85.3
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 6.1e-157 557.8 352 80.1
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 1.1e-153 547.0 349 76.5
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.3e-151 540.0 351 75.8
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 1.5e-150 536.6 353 75.4
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 5.5e-150 534.6 351 75.5
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 7.2e-150 534.3 351 75.5
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.2e-149 533.5 349 75.1
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.1e-149 532.7 349 74.2
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 4.7e-149 531.6 345 76.8
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 3.0e-148 528.9 354 74.9
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 9.8e-147 523.9 354 73.4
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 9.8e-147 523.9 346 74.0
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 9.8e-147 523.9 346 74.6
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.3e-146 523.5 344 74.4
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 2.2e-146 522.7 391 68.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 4.8e-146 521.5 312 79.8
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 8.3e-146 520.8 345 74.5
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.1e-145 520.4 341 74.8
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.8e-145 519.6 346 73.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.8e-145 519.6 348 73.3
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 2.4e-145 519.2 350 73.4
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.1e-145 518.8 344 74.7
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 4.1e-145 518.5 346 73.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 7.0e-145 517.7 345 74.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 1.2e-144 516.9 346 72.5
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.6e-144 516.5 345 73.3
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.0e-144 516.2 349 73.6
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 2.7e-144 515.8 348 73.6
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 2.7e-144 515.8 346 73.4
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 5.9e-144 514.6 334 74.9
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 5.9e-144 514.6 371 69.3
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 7.7e-144 514.2 301 81.1
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 7.7e-144 514.2 301 81.1
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 7.7e-144 514.2 307 80.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.3e-143 513.5 319 77.1
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 1.3e-143 513.5 307 80.1
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.7e-143 513.1 309 80.9
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-143 512.7 319 77.1
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.3e-143 512.7 343 74.1
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 3.8e-143 511.9 307 80.1
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 3.8e-143 511.9 307 79.8
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 2.5e-142 509.2 301 81.4
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 5.5e-142 508.1 303 80.9
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 5.5e-142 508.1 348 71.0
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 7.2e-142 507.7 344 72.4
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 9.5e-142 507.3 349 71.6
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 9.5e-142 507.3 305 80.0
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.2e-141 506.9 344 72.4
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.6e-141 506.5 351 71.8
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.1e-141 506.1 303 80.9
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 2.1e-141 506.1 354 70.6
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 4.7e-141 505.0 355 71.0
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 6.1e-141 504.6 309 77.7
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 3.0e-140 502.3 301 79.4
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 5.2e-140 501.5 303 80.2
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 5.2e-140 501.5 324 74.7
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.5e-139 500.0 309 77.3
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 3.4e-139 498.8 348 70.7
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 7.5e-139 497.7 324 74.1
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.2e-138 496.1 309 76.7
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.0e-136 489.6 324 75.6
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 1.7e-135 486.5 318 75.5
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 2.1e-133 479.6 390 64.4
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.8e-132 476.5 341 69.5
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 2.0e-131 473.0 319 72.7
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 3.4e-131 472.2 330 68.8
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.1e-129 467.2 304 72.0
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 7.8e-128 461.1 281 78.6
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 3.0e-127 459.1 304 74.3
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 2.1e-125 453.0 322 71.1
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 2.6e-123 446.0 319 68.7
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.9e-122 442.6 302 68.2
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.9e-122 442.6 302 68.2
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 2.1e-120 436.4 356 65.7
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.7e-120 436.0 343 63.6
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.0e-119 434.1 325 63.4
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.5e-118 429.5 292 72.6
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.0e-116 422.2 316 67.4
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 7.6e-115 417.9 300 64.7
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 4.6e-112 408.7 285 69.5
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 9.6e-110 401.0 309 66.7
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 1.5e-102 377.1 240 76.2
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.3e-98 364.0 280 64.3
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 6.6e-95 351.7 356 50.3
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 3.4e-91 339.3 308 53.6
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 7.6e-91 338.2 250 69.2
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 3.7e-85 319.3 258 61.2
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.9e-81 307.0 184 79.3
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.6e-80 302.4 243 65.8
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 6.7e-79 298.5 309 50.2
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.9e-78 297.0 306 54.6
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.1e-76 291.2 243 58.8
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 9.0e-76 288.1 226 63.7
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.5e-67 260.8 204 64.2
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 5.9e-67 258.8 239 61.1
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 6.9e-60 235.3 124 86.3
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 2.0e-59 233.8 124 85.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.7e-56 222.6 123 81.3
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.7e-56 222.6 123 81.3
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 9.4e-49 198.4 182 59.3
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 4.0e-47 193.0 150 67.3
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.0e-39 166.8 122 64.8
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.2e-38 164.9 144 63.2
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.5e-38 164.5 120 73.3
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 3.7e-37 159.8 297 36.0
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 4.5e-35 152.9 102 75.5
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 6.5e-34 149.1 117 69.2
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 8.5e-34 148.7 304 29.9
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 3.2e-33 146.7 78 88.5
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 2.4e-28 130.6 102 67.6
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 7.0e-28 129.0 186 39.8
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 6.6e-26 122.5 154 51.9
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 1.9e-25 120.9 66 83.3
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 9.8e-22 108.6 102 55.9
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 5.4e-20 102.8 185 36.8
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 5.9e-19 99.4 132 48.5
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 7.0e-12 75.9 45 77.8
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.0e-11 74.3 64 59.4
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 3.1e-07 60.5 59 55.9
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 3.1e-07 60.5 224 27.2
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 1.2e-06 58.5 230 27.0
Psat5g077160 Pisum sativum HOM05D001625 ORTHO05D008114 2.0e-06 57.8 230 24.8
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 3.4e-06 57.0 225 27.6


User provided reference genes

Program Settings