Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 3.3e-110 401.7 204 100.0
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 6.0e-64 248.1 211 66.8
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 5.1e-63 245.0 211 65.9
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.5e-62 242.7 214 65.4
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 9.6e-62 240.7 213 64.3
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 1.1e-60 237.3 210 62.9
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.8e-60 236.5 213 64.3
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.8e-60 236.5 213 64.3
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 9.0e-60 234.2 212 63.7
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 2.0e-59 233.0 212 63.2
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 7.6e-59 231.1 208 62.5
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 2.2e-42 176.4 209 47.4
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 5.5e-41 171.8 130 62.3
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 2.1e-40 169.9 123 63.4
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 6.1e-40 168.3 129 62.8
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 6.1e-40 168.3 117 67.5
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 7.9e-40 167.9 136 62.5
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 7.9e-40 167.9 142 60.6
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.0e-39 167.5 123 65.0
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.0e-39 167.5 131 60.3
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.0e-39 167.5 137 59.1
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.8e-39 166.8 122 65.6
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 3.0e-39 166.0 131 60.3
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 5.1e-39 165.2 129 60.5
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 6.7e-39 164.9 132 59.8
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 1.5e-38 163.7 131 60.3
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 1.5e-38 163.7 206 47.1
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 1.5e-38 163.7 206 47.1
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.5e-38 163.7 177 51.4
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 1.9e-38 163.3 114 65.8
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 2.5e-38 162.9 129 60.5
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 3.3e-38 162.5 128 60.2
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 3.3e-38 162.5 191 47.6
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 5.7e-38 161.8 145 55.9
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 1.3e-37 160.6 200 47.0
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.6e-37 160.2 116 67.2
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.6e-37 160.2 122 62.3
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.6e-37 160.2 200 48.0
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.6e-37 160.2 118 64.4
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 2.2e-37 159.8 179 50.8
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 2.2e-37 159.8 142 57.0
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 2.2e-37 159.8 124 62.9
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 2.8e-37 159.5 116 63.8
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 2.8e-37 159.5 203 45.8
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.7e-37 159.1 134 58.2
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 4.8e-37 158.7 159 54.1
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 4.8e-37 158.7 130 60.0
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 6.3e-37 158.3 114 64.9
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 6.3e-37 158.3 114 64.9
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 6.3e-37 158.3 114 64.9
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 8.2e-37 157.9 120 63.3
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 8.2e-37 157.9 139 57.6
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 8.2e-37 157.9 139 57.6
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.1e-36 157.5 208 45.2
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 1.4e-36 157.1 205 47.8
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.8e-36 156.8 198 44.9
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 3.1e-36 156.0 190 47.4
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 3.1e-36 156.0 190 47.4
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 3.1e-36 156.0 115 63.5
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 4.1e-36 155.6 197 43.7
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 3.4e-35 152.5 119 61.3
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 4.5e-35 152.1 202 43.1
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 4.5e-35 152.1 195 43.6
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.0e-34 151.0 190 45.3
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 1.0e-34 151.0 183 48.1
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.0e-34 151.0 108 67.6
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.3e-34 150.6 120 58.3
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.3e-34 150.6 211 46.4
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 8.5e-34 147.9 120 58.3
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 1.9e-33 146.7 129 55.8
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 3.2e-33 146.0 135 54.8
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 4.2e-33 145.6 116 61.2
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 2.7e-32 142.9 180 46.1
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 2.7e-32 142.9 116 55.2
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 6.1e-32 141.7 198 44.9
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.0e-31 141.0 172 45.9
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.0e-31 141.0 115 59.1
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.4e-31 140.6 236 41.1
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.8e-31 140.2 134 52.2
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 1.8e-31 140.2 119 57.1
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.3e-31 139.8 125 54.4
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.0e-31 139.4 111 56.8
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 3.9e-31 139.0 198 44.4
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.1e-30 137.5 120 55.8
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.1e-30 137.5 113 54.0
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.5e-30 137.1 199 42.2
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.0e-30 136.7 113 54.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 2.6e-30 136.3 193 44.6
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 3.3e-30 136.0 188 42.0
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 9.7e-30 134.4 103 61.2
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.8e-29 132.1 100 61.0
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 5.0e-26 122.1 171 43.9
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 4.2e-25 119.0 123 45.5
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 3.9e-23 112.5 174 40.2
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 4.4e-22 109.0 119 47.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 4.4e-22 109.0 124 47.6
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 9.7e-22 107.8 106 51.9
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.3e-21 107.5 86 60.5
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 4.1e-20 102.4 89 55.1
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 5.3e-20 102.1 121 45.5
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 5.3e-20 102.1 141 43.3
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 5.9e-19 98.6 119 42.9
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.5e-17 94.0 167 38.3
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.9e-17 93.6 114 40.4
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 7.2e-17 91.7 73 58.9
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 2.7e-16 89.7 123 41.5
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 1.8e-15 87.0 136 37.5
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 4.4e-14 82.4 114 39.5
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 9.7e-14 81.3 109 38.5
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.4e-07 60.8 56 53.6
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 2.0e-06 57.0 116 37.1
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 5.7e-06 55.5 123 32.5


User provided reference genes

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