Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 6.9e-42 173.7 97 100.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.5e-28 129.4 97 74.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.9e-28 129.0 97 74.2
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 4.3e-28 127.9 97 74.2
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.4e-26 122.9 90 75.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.8e-26 122.5 98 72.4
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 2.4e-26 122.1 89 77.5
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.2e-25 119.8 100 71.0
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 9.9e-25 116.7 97 70.1
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 4.9e-24 114.4 98 69.4
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 4.9e-24 114.4 90 73.3
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.1e-23 113.2 97 67.0
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.9e-23 112.5 97 71.1
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 2.1e-22 109.0 96 65.6
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 2.1e-22 109.0 96 65.6
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.1e-22 109.0 90 71.1
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 2.7e-22 108.6 93 68.8
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.0e-21 106.7 91 69.2
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.8e-21 105.9 98 66.3
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.9e-20 102.4 98 65.3
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 5.6e-20 100.9 97 61.9
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 6.2e-19 97.4 91 61.5
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 8.2e-19 97.1 92 65.2
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.8e-18 95.9 91 60.4
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 3.1e-18 95.1 98 58.2
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 6.9e-18 94.0 93 62.4
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 6.9e-18 94.0 96 58.3
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 6.9e-18 94.0 94 61.7
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 9.0e-18 93.6 98 62.2
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.5e-17 92.8 96 56.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.5e-17 92.8 100 57.0
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.5e-17 92.8 98 60.2
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.0e-17 92.4 100 57.0
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.6e-17 92.0 94 57.4
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.4e-17 91.7 92 56.5
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 3.4e-17 91.7 98 59.2
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 4.5e-17 91.3 93 54.8
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 4.5e-17 91.3 97 58.8
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 4.5e-17 91.3 91 61.5
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 5.8e-17 90.9 93 57.0
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 7.6e-17 90.5 96 62.5
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.0e-16 90.1 97 56.7
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 1.3e-16 89.7 80 67.5
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.7e-16 89.4 94 59.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 2.2e-16 89.0 98 56.1
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.8e-16 88.2 97 55.7
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.8e-16 88.2 97 55.7
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.9e-16 87.8 96 55.2
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 1.4e-15 86.3 94 57.4
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.2e-15 84.7 92 58.7
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 9.3e-15 83.6 98 51.0
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.2e-14 83.2 94 56.4
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.6e-14 82.8 92 54.3
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 93 53.8
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 2.7e-14 82.0 98 52.0
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 4.6e-14 81.3 97 51.5
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 6.0e-14 80.9 97 49.5
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 6.0e-14 80.9 95 51.6
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 7.9e-14 80.5 93 53.8
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.3e-13 79.7 92 57.6
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.3e-13 79.7 90 52.2
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 1.8e-13 79.3 87 55.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 1.8e-13 79.3 87 55.2
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.3e-13 79.0 79 57.0
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.3e-13 79.0 94 54.3
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 6.7e-13 77.4 98 49.0
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 6.7e-13 77.4 93 52.7
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 8.7e-13 77.0 96 51.0
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 8.7e-13 77.0 91 52.7
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.1e-12 76.6 99 53.5
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 1.5e-12 76.3 94 51.1
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.9e-12 75.9 94 54.3
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.9e-12 75.9 91 52.7
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 2.5e-12 75.5 98 51.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.5e-12 75.5 97 50.5
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.3e-12 75.1 91 53.8
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 3.3e-12 75.1 97 49.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 3.3e-12 75.1 97 49.5
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 4.3e-12 74.7 96 45.8
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 5.7e-12 74.3 95 52.6
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 7.4e-12 73.9 95 46.3
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 9.7e-12 73.6 96 47.9
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 9.7e-12 73.6 92 48.9
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 1.3e-11 73.2 92 50.0
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 1.3e-11 73.2 92 50.0
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.3e-11 73.2 93 51.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 8.2e-11 70.5 91 52.7
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 8.2e-11 70.5 98 46.9
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.4e-10 69.7 98 54.1
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.4e-10 69.7 88 54.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.8e-10 69.3 92 50.0
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.1e-10 68.6 97 48.5
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 5.3e-10 67.8 82 52.4
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 9.0e-10 67.0 85 52.9
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 2.0e-09 65.9 89 50.6
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 4.5e-09 64.7 89 50.6
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.0e-08 63.5 97 48.5
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.3e-08 63.2 92 46.7
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.9e-08 62.0 75 50.7
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 2.9e-08 62.0 58 58.6
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 3.8e-08 61.6 87 46.0
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 3.8e-08 61.6 46 69.6
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.1e-07 60.1 48 64.6
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 7.2e-07 57.4 85 51.8
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 9.3e-07 57.0 92 43.5
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.2e-06 56.6 99 47.5
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 1.2e-06 56.6 64 56.2
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.6e-06 56.2 91 46.2
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 1.6e-06 56.2 92 47.8
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 4.6e-06 54.7 90 45.6
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 6.1e-06 54.3 89 46.1
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.9e-06 53.9 96 39.6
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 7.9e-06 53.9 37 73.0


User provided reference genes

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