Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.8e-244 848.6 576 100.0
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 9.2e-118 428.3 591 55.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.8e-114 416.8 588 64.8
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.8e-113 414.1 581 62.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.8e-106 390.2 551 57.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 6.8e-105 385.6 554 59.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 9.8e-104 381.7 581 54.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.2e-103 380.6 581 58.2
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 4.9e-103 379.4 578 60.2
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 6.4e-103 379.0 581 58.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.3e-100 371.3 593 59.2
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.3e-100 370.5 580 56.4
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.3e-100 370.5 580 56.4
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.8e-98 363.6 595 56.5
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 8.1e-98 362.1 570 53.2
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.7e-87 327.8 571 55.7
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.9e-86 324.3 584 51.0
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.1e-78 298.5 580 56.4
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.1e-57 228.8 585 36.6
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.4e-56 223.8 544 37.5
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 3.4e-56 223.8 592 36.7
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 7.6e-56 222.6 547 37.3
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-53 215.3 547 36.2
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 3.0e-52 210.7 549 43.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 8.7e-52 209.1 524 36.1
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.5e-51 207.6 592 34.6
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.2e-50 204.5 611 36.0
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 6.3e-50 203.0 586 46.1
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.9e-48 196.4 592 35.8
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.0e-47 193.4 557 35.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.0e-47 193.4 557 35.0
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 8.5e-47 192.6 556 35.3
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.4e-46 191.8 554 40.3
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 6.1e-45 186.4 541 34.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.0e-44 185.7 580 34.3
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.9e-44 183.7 564 33.9
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 6.7e-44 183.0 551 47.7
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.7e-44 183.0 509 35.4
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 8.8e-44 182.6 578 32.7
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-43 181.8 527 34.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 5.7e-43 179.9 541 42.5
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 9.7e-43 179.1 551 48.1
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.2e-42 177.9 570 33.5
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.8e-42 176.8 556 33.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 4.8e-42 176.8 539 43.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 8.2e-42 176.0 518 34.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.8e-41 174.9 556 32.9
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.1e-41 174.1 569 32.9
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 5.9e-40 169.9 526 37.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.9e-40 169.9 550 32.4
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 7.7e-40 169.5 532 31.2
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.0e-39 166.8 505 33.5
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.5e-38 164.5 551 43.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.2e-37 162.2 516 32.2
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.6e-37 161.8 607 32.9
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.6e-37 161.8 544 32.9
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.6e-37 161.8 544 32.9
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.7e-37 160.2 541 32.3
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 5.7e-35 153.3 529 31.9
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.3e-34 152.1 531 42.9
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.3e-34 152.1 540 30.7
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.7e-34 150.6 567 30.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.1e-33 149.1 258 43.8
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.1e-33 149.1 551 45.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.4e-33 147.9 549 32.2
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 3.1e-33 147.5 549 33.0
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.1e-33 147.5 556 31.8
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 5.3e-33 146.7 545 40.2
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 7.0e-33 146.4 594 32.2
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.2e-32 145.6 574 30.3
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.0e-31 142.5 601 41.8
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.9e-31 141.0 511 34.6
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 3.8e-31 140.6 253 44.7
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.0e-31 140.2 574 40.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 6.5e-31 139.8 260 41.2
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 8.5e-31 139.4 514 43.6
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 8.5e-31 139.4 246 44.3
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 8.5e-31 139.4 509 30.6
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.9e-30 138.3 271 40.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-30 138.3 583 29.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.9e-30 138.3 204 49.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 4.2e-30 137.1 230 43.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 4.2e-30 137.1 230 43.0
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 4.2e-30 137.1 528 32.6
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.5e-30 136.7 545 32.5
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 5.5e-30 136.7 583 28.5
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 9.4e-30 136.0 237 43.9
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 9.4e-30 136.0 524 28.6
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.6e-29 135.2 211 44.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.1e-29 134.8 485 31.5
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 4.7e-29 133.7 207 44.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 6.1e-29 133.3 575 29.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 8.0e-29 132.9 576 36.5
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-28 131.7 212 42.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.8e-28 131.7 246 44.3
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.8e-28 131.7 576 31.1
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.8e-28 131.7 569 32.3
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.0e-28 131.0 555 31.4
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.0e-28 131.0 587 31.3
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 5.2e-28 130.2 523 29.8
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 5.2e-28 130.2 252 40.9
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 6.7e-28 129.8 212 42.0
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 6.7e-28 129.8 595 28.9
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.4e-27 127.1 485 32.4
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 5.7e-27 126.7 540 33.1
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.7e-27 126.7 627 30.3
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.5e-27 126.3 603 30.3
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 7.5e-27 126.3 544 30.7
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 9.7e-27 125.9 584 29.8
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 6.3e-26 123.2 523 29.3
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.1e-25 120.9 566 29.3
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.0e-24 118.2 572 28.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 2.7e-24 117.9 543 30.4
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.3e-23 115.5 583 29.8
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.3e-23 115.5 584 30.1
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.2e-23 114.8 196 42.3
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.2e-23 114.8 229 41.9
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.9e-23 114.4 561 29.6
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 5.0e-23 113.6 234 40.2
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.1e-22 112.5 224 41.1
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.2e-22 110.9 469 31.8
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.2e-22 110.5 202 43.6
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 5.5e-22 110.2 239 39.3
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 7.2e-22 109.8 258 37.6
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 9.4e-22 109.4 578 28.9
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.6e-21 108.6 523 29.8
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.7e-21 107.8 524 27.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.1e-21 106.7 257 38.1
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.4e-20 105.5 521 28.2
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.0e-20 104.4 523 28.3
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 3.0e-20 104.4 552 26.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 5.2e-20 103.6 593 30.0
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.2e-19 102.4 585 27.7
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 4.4e-19 100.5 582 28.2
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.4e-19 100.5 517 32.7
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 5.7e-19 100.1 579 37.3
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 9.8e-19 99.4 479 31.5
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.3e-18 99.0 217 42.9
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 8.3e-18 96.3 155 43.9
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 2.4e-17 94.7 516 26.6
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.1e-17 94.0 573 31.6
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 9.1e-17 92.8 549 28.6
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.0e-16 91.7 157 43.9
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.0e-16 91.7 550 28.4
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 5.9e-16 90.1 578 27.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.0e-15 89.4 200 37.5
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.9e-15 87.8 524 27.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.2e-14 84.3 515 26.6
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.2e-14 84.0 219 36.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.4e-14 82.8 200 30.5
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.6e-13 82.0 142 46.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 6.1e-13 80.1 556 27.0
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.1e-13 80.1 170 37.6
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.4e-12 79.0 586 25.8
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.3e-12 78.2 570 31.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 8.8e-12 76.3 144 41.7
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.0e-11 75.1 458 32.5
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.4e-11 74.3 583 26.8
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 5.7e-11 73.6 140 39.3
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 5.7e-11 73.6 181 36.5
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 2.2e-10 71.6 122 50.8
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.8e-10 71.2 140 36.4
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.4e-09 68.9 87 50.6
BolC3t21046H Brassica oleracea HOM05D009573 ORTHO05D004035 1.8e-09 68.6 106 50.0
BolC6t37222H Brassica oleracea HOM05D009573 ORTHO05D004035 1.8e-09 68.6 106 50.9
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.8e-09 68.6 187 37.4
BcaC09g50974 Brassica carinata HOM05D009573 ORTHO05D016742 5.4e-09 67.0 106 49.1
C01p18560 Brassica napus HOM05D009573 ORTHO05D016742 5.4e-09 67.0 106 49.1
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 5.4e-09 67.0 572 25.9
BolC9t55701H Brassica oleracea HOM05D009573 ORTHO05D014968 9.2e-09 66.2 113 47.8
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 1.2e-08 65.9 186 37.1
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.6e-08 65.5 172 38.4
C07p48280 Brassica napus HOM05D009573 ORTHO05D017440 2.0e-08 65.1 94 54.3
BolC2t11705H Brassica oleracea HOM05D009573 ORTHO05D014968 2.7e-08 64.7 101 55.4
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.7e-08 64.7 88 46.6
C06p24730 Brassica napus HOM05D009573 ORTHO05D014968 3.5e-08 64.3 106 48.1
C03p81960 Brassica napus HOM05D009573 ORTHO05D016742 4.5e-08 63.9 117 50.4
BcaC08g44389 Brassica carinata HOM05D009573 ORTHO05D016742 5.9e-08 63.5 106 47.2
C03p81970 Brassica napus HOM05D009573 ORTHO05D014968 5.9e-08 63.5 94 52.1
BolC6t37033H Brassica oleracea HOM05D009573 ORTHO05D014968 5.9e-08 63.5 106 47.2
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 5.9e-08 63.5 146 41.1
BolC6t37626H Brassica oleracea HOM05D009573 ORTHO05D014968 7.7e-08 63.2 106 51.9
BolC4t28025H Brassica oleracea HOM05D009573 ORTHO05D014968 1.0e-07 62.8 105 45.7
BolC5t29034H Brassica oleracea HOM05D009573 ORTHO05D004035 1.7e-07 62.0 79 53.2
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 8.6e-07 59.7 220 31.8
BcaC06g33517 Brassica carinata HOM05D000005 ORTHO05D017440 1.9e-06 58.5 61 60.7
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.3e-06 57.4 79 46.8


User provided reference genes

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