Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 9.2e-67 256.9 145 100.0
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.8e-44 181.8 144 76.4
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 4.6e-34 148.3 151 62.3
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 8.7e-33 144.1 151 60.3
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.6e-31 139.8 151 59.6
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.8e-31 139.0 151 57.0
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 7.6e-29 131.0 143 55.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.0e-25 120.6 180 47.2
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 4.8e-23 111.7 147 51.0
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 4.8e-23 111.7 147 51.0
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 3.1e-22 109.0 151 51.0
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.0e-21 106.3 147 51.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 2.9e-20 102.4 143 46.9
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 3.2e-19 99.0 149 47.7
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.7e-18 95.9 137 43.8
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.6e-18 95.1 119 47.1
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 7.9e-18 94.4 119 47.1
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.0e-17 94.0 136 43.4
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.3e-17 93.6 144 43.1
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.3e-17 92.8 170 44.1
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 3.0e-17 92.4 119 47.9
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 3.0e-17 92.4 119 47.9
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 3.9e-17 92.0 119 46.2
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.9e-17 92.0 135 42.2
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 6.7e-17 91.3 135 42.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.1e-16 90.5 148 40.5
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.5e-16 90.1 144 40.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.9e-16 89.7 114 48.2
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.9e-16 89.7 114 48.2
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.9e-16 89.7 144 42.4
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 2.5e-16 89.4 115 49.6
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.5e-16 89.4 155 39.4
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 2.5e-16 89.4 137 42.3
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.3e-16 89.0 147 41.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 3.3e-16 89.0 144 41.0
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 9.7e-16 87.4 146 42.5
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 9.7e-16 87.4 146 42.5
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.3e-15 87.0 162 38.3
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.3e-15 87.0 158 42.4
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.3e-15 87.0 113 45.1
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.3e-15 87.0 134 43.3
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.2e-15 86.3 135 40.7
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 2.2e-15 86.3 130 40.0
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.7e-15 85.5 119 42.9
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 4.8e-15 85.1 70 61.4
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 6.3e-15 84.7 145 40.7
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.3e-15 84.7 146 39.7
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 6.3e-15 84.7 146 39.7
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 6.3e-15 84.7 116 44.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 2.4e-14 82.8 119 46.2
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 3.1e-14 82.4 134 38.8
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 3.1e-14 82.4 119 46.2
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 3.1e-14 82.4 135 39.3
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 4.1e-14 82.0 118 42.4
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.3e-14 81.6 119 41.2
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.3e-14 81.6 106 48.1
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 6.9e-14 81.3 115 45.2
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 6.9e-14 81.3 119 42.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 9.0e-14 80.9 115 45.2
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 1.2e-13 80.5 120 40.0
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.2e-13 80.5 130 41.5
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.5e-13 80.1 119 44.5
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.5e-13 80.1 142 40.1
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.0e-13 79.7 156 35.9
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 2.0e-13 79.7 119 41.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.6e-13 79.3 137 39.4
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 2.6e-13 79.3 135 40.7
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.5e-13 78.6 116 43.1
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 5.9e-13 78.2 137 38.7
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.3e-12 77.0 104 47.1
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.7e-12 76.6 137 39.4
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 2.2e-12 76.3 120 38.3
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 2.2e-12 76.3 147 35.4
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 2.9e-12 75.9 159 39.6
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 2.9e-12 75.9 119 41.2
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.9e-12 75.9 135 39.3
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 3.8e-12 75.5 143 37.8
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.0e-12 75.1 139 36.7
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.5e-12 74.7 143 38.5
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 8.5e-12 74.3 130 37.7
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-11 73.9 118 39.8
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.4e-11 73.6 132 43.2
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.9e-11 73.2 139 37.4
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.9e-11 73.2 104 45.2
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.5e-11 72.8 122 39.3
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.5e-11 72.8 103 49.5
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 4.2e-11 72.0 150 35.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 4.2e-11 72.0 142 37.3
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 7.2e-11 71.2 141 41.1
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 7.2e-11 71.2 141 41.1
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.2e-11 71.2 123 39.0
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 9.4e-11 70.9 130 36.2
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.4e-11 70.9 130 36.2
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.4e-11 70.9 130 36.2
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.1e-10 69.7 150 34.7
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 2.7e-10 69.3 114 39.5
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.7e-10 69.3 114 39.5
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 2.7e-10 69.3 156 37.2
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 3.6e-10 68.9 86 45.3
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 4.6e-10 68.6 156 37.2
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.4e-09 67.0 144 35.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.3e-09 66.2 147 33.3
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 5.1e-09 65.1 125 36.0
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 6.7e-09 64.7 151 39.1
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.1e-08 63.9 93 45.2
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 4.3e-08 62.0 53 60.4
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 4.3e-08 62.0 96 39.6
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 5.7e-08 61.6 101 38.6
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.7e-08 60.8 137 33.6
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 9.7e-08 60.8 150 32.7
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 8.2e-07 57.8 130 32.3
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.4e-06 57.0 118 31.4
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.8e-06 56.6 124 36.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.1e-06 54.3 122 32.0
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 9.1e-06 54.3 113 31.0


User provided reference genes

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