Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 6.2e-129 464.2 237 100.0
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 4.8e-89 331.6 253 71.9
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 2.4e-88 329.3 242 74.4
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 4.1e-88 328.6 237 73.8
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 2.9e-86 322.4 237 73.4
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 3.2e-85 318.9 237 73.0
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 1.8e-83 313.2 240 70.4
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 2.8e-81 305.8 241 71.0
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 5.3e-80 301.6 242 69.4
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 5.3e-80 301.6 252 67.1
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.2e-79 300.4 243 69.1
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.2e-79 300.4 243 69.1
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 2.6e-74 282.7 246 65.0
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 4.7e-68 261.9 202 65.3
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 4.7e-68 261.9 239 59.0
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 3.0e-67 259.2 239 59.8
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 4.0e-67 258.8 240 60.8
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 1.2e-66 257.3 192 68.8
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.5e-66 256.9 239 60.7
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 1.7e-65 253.4 203 64.0
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 2.8e-65 252.7 224 59.8
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 3.7e-65 252.3 240 58.8
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 8.3e-65 251.1 226 60.2
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 1.8e-64 250.0 239 59.4
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 2.4e-64 249.6 192 65.1
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 2.4e-64 249.6 226 59.3
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 7.0e-64 248.1 239 56.9
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.7e-63 246.1 237 57.0
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 2.7e-63 246.1 216 59.3
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 2.7e-63 246.1 241 58.1
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 3.5e-63 245.7 226 58.0
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 4.5e-63 245.4 203 61.1
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 4.5e-63 245.4 241 56.0
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 7.7e-63 244.6 226 58.4
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.7e-63 244.6 190 64.7
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.7e-63 244.6 190 64.7
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 7.7e-63 244.6 194 64.9
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.0e-62 244.2 232 57.8
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 1.3e-62 243.8 195 64.1
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 1.3e-62 243.8 239 57.3
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 1.3e-62 243.8 191 62.3
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 1.7e-62 243.4 238 55.9
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 2.9e-62 242.7 195 63.6
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 3.8e-62 242.3 237 56.1
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 5.0e-62 241.9 205 60.0
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 8.5e-62 241.1 229 58.1
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 8.5e-62 241.1 216 60.2
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.5e-61 240.4 229 57.6
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 1.9e-61 240.0 243 55.6
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 2.5e-61 239.6 238 55.5
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 4.2e-61 238.8 212 59.9
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 7.2e-61 238.0 220 58.6
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 9.4e-61 237.7 240 54.2
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 9.4e-61 237.7 196 63.3
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-60 236.9 235 57.0
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 1.6e-60 236.9 177 68.4
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.1e-60 236.5 226 57.1
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.4e-59 233.8 241 53.5
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 2.3e-59 233.0 298 48.0
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 3.0e-59 232.6 233 58.8
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 3.0e-59 232.6 240 54.2
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 2.6e-58 229.6 240 56.2
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 4.4e-58 228.8 240 54.2
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 4.4e-58 228.8 235 54.5
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 7.5e-58 228.0 221 54.3
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 2.8e-57 226.1 198 59.1
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 2.8e-57 226.1 203 55.2
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 4.8e-57 225.3 202 58.9
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 6.3e-57 224.9 231 55.0
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 1.8e-56 223.4 194 60.3
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 1.8e-56 223.4 236 54.2
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 9.1e-56 221.1 239 52.3
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 1.2e-55 220.7 190 59.5
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.0e-55 219.9 177 61.6
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.0e-55 219.9 179 63.1
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 2.7e-55 219.5 236 52.5
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 3.5e-55 219.2 184 61.4
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 7.7e-55 218.0 247 51.4
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 2.3e-54 216.5 226 54.0
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 2.9e-54 216.1 192 58.3
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 2.9e-54 216.1 180 61.7
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 1.5e-53 213.8 179 61.5
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 3.3e-53 212.6 250 52.0
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 1.2e-52 210.7 223 52.0
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 2.8e-52 209.5 191 58.1
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 8.0e-52 208.0 192 55.7
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 2.6e-50 203.0 141 67.4
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 6.3e-49 198.4 142 65.5
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 2.7e-47 193.0 267 45.3
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 2.1e-44 183.3 247 43.7
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 5.4e-40 168.7 206 49.5
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 1.3e-38 164.1 199 51.8
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 5.2e-35 152.1 174 50.6
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 2.9e-33 146.4 106 64.2
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 8.3e-33 144.8 106 63.2
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 7.8e-31 138.3 140 55.7
Aa31LG10G9070 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.3e-30 137.5 90 90.0
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 6.6e-30 135.2 99 69.7
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 1.5e-29 134.0 191 38.2
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 7.6e-26 121.7 121 62.0
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 1.9e-24 117.1 181 39.8
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.2e-20 104.4 123 55.3
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 8.1e-20 101.7 71 64.8
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 1.1e-19 101.3 105 55.2
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 3.1e-19 99.8 69 69.6
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 9.9e-18 94.7 109 46.8
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 7.8e-15 85.1 103 48.5
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.2e-12 75.5 73 57.5
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.2e-12 75.5 55 67.3
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 9.0e-11 71.6 60 60.0
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 7.6e-10 68.6 77 54.5


User provided reference genes

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