Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G10160 Aethionema arabicum HOM05D003596 ORTHO05D004256 4.5e-42 174.1 83 100.0
Thhalv10025572m.g Eutrema salsugineum HOM05D003596 ORTHO05D004256 4.8e-28 127.5 71 80.3
AL7G18450 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 8.2e-28 126.7 71 80.3
AL7G39850 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 1.4e-27 125.9 65 84.6
BcaC09g52108 Brassica carinata HOM05D003596 ORTHO05D004256 1.4e-27 125.9 71 78.9
C01p05570 Brassica napus HOM05D003596 ORTHO05D004256 1.4e-27 125.9 71 78.9
BolC1t00537H Brassica oleracea HOM05D003596 ORTHO05D004256 1.4e-27 125.9 71 78.9
A03p61780 Brassica napus HOM05D003596 ORTHO05D004256 1.8e-27 125.6 71 78.9
BraA03t15215Z Brassica rapa HOM05D003596 ORTHO05D004256 1.8e-27 125.6 71 78.9
AL6G32760 Arabidopsis lyrata HOM05D003596 ORTHO05D004256 3.1e-27 124.8 65 83.1
AT4G33110 Arabidopsis thaliana HOM05D003596 ORTHO05D004256 3.1e-27 124.8 65 84.6
Carub.0007s0734 Capsella rubella HOM05D003596 ORTHO05D004256 3.1e-27 124.8 71 78.9
A01p05090 Brassica napus HOM05D003596 ORTHO05D004256 4.1e-27 124.4 65 83.1
BraA01t00492Z Brassica rapa HOM05D003596 ORTHO05D004256 4.1e-27 124.4 65 83.1
C07p59490 Brassica napus HOM05D003596 ORTHO05D004256 5.3e-27 124.0 71 77.5
BolC7t46393H Brassica oleracea HOM05D003596 ORTHO05D004256 7.0e-27 123.6 65 81.5
BolC7t46392H Brassica oleracea HOM05D003596 ORTHO05D004256 1.6e-26 122.5 71 76.1
Sp7g30860 Schrenkiella parvula HOM05D003596 ORTHO05D004256 1.6e-26 122.5 71 77.5
CARHR241140 Cardamine hirsuta HOM05D003596 ORTHO05D004256 3.5e-26 121.3 71 77.5
BcaC09g52112 Brassica carinata HOM05D003596 ORTHO05D004256 7.7e-26 120.2 71 74.6
EL10Ac2g03812 Beta vulgaris HOM05D003596 ORTHO05D004256 5.0e-25 117.5 71 74.6
THA.LOC104803717 Tarenaya hassleriana HOM05D003596 ORTHO05D004256 5.0e-25 117.5 71 71.8
PSO210G3757 Papaver somniferum HOM05D003596 ORTHO05D004256 6.5e-25 117.1 71 74.6
Potri.018G060000 Populus trichocarpa HOM05D003596 ORTHO05D004256 6.5e-25 117.1 71 73.2
AT4G33120 Arabidopsis thaliana HOM05D003596 ORTHO05D004256 1.1e-24 116.3 65 78.5
Prupe.1G407700 Prunus persica HOM05D003596 ORTHO05D004256 1.1e-24 116.3 71 71.8
arahy.Tifrunner.gnm1.ann1.YCFU7L Arachis hypogaea HOM05D003596 ORTHO05D004256 1.9e-24 115.5 71 73.2
Ciclev10008761m.g Citrus clementina HOM05D003596 ORTHO05D004256 1.9e-24 115.5 71 70.4
Migut.A00103 Erythranthe guttata HOM05D003596 ORTHO05D004256 1.9e-24 115.5 71 71.8
PSO210G4954 Papaver somniferum HOM05D003596 ORTHO05D004256 1.9e-24 115.5 71 73.2
Cpa.g.sc91.83 Carica papaya HOM05D003596 ORTHO05D004256 2.5e-24 115.2 71 71.8
CAN.G143.21 Capsicum annuum HOM05D003596 ORTHO05D004256 3.2e-24 114.8 71 73.2
AUR62020561 Chenopodium quinoa HOM05D003596 ORTHO05D004256 3.2e-24 114.8 73 69.9
MELO3C016892.2 Cucumis melo HOM05D003596 ORTHO05D004256 3.2e-24 114.8 71 71.8
CsaV3_4G035870 Cucumis sativus L. HOM05D003596 ORTHO05D004256 3.2e-24 114.8 71 71.8
Aa31sc651G10 Aethionema arabicum HOM05D003596 ORTHO05D004256 4.2e-24 114.4 73 76.7
Lsat_1_v5_gn_7_60761 Lactuca sativa HOM05D003596 ORTHO05D004256 4.2e-24 114.4 71 70.4
Lj1g0007600 Lotus japonicus HOM05D003596 ORTHO05D004256 4.2e-24 114.4 71 70.4
TPR.G3519 Trifolium pratense HOM05D003596 ORTHO05D004256 4.2e-24 114.4 71 71.8
COL.COLO4_21105 Corchorus olitorius HOM05D003596 ORTHO05D004256 5.5e-24 114.0 71 70.4
DCAR_003143 Daucus carota HOM05D003596 ORTHO05D004256 5.5e-24 114.0 71 73.2
Medtr3g104740 Medicago truncatula HOM05D003596 ORTHO05D004256 7.2e-24 113.6 71 71.8
Nitab4.5_0002797g0010 Nicotiana tabacum HOM05D003596 ORTHO05D004256 7.2e-24 113.6 71 71.8
Psat5g035520 Pisum sativum HOM05D003596 ORTHO05D004256 7.2e-24 113.6 71 70.4
Thecc.09G058900 Theobroma cacao HOM05D003596 ORTHO05D004256 7.2e-24 113.6 71 71.8
Ah.10g034070 Amaranthus hybridus HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 70.4
Cfa017996 Carpinus fangiana HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 71.8
Haze_18139 Corylus avellana HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 71.8
Gohir.A05G040200 Gossypium hirsutum HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 71.8
Gohir.A05G040250 Gossypium hirsutum HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 71.8
Gohir.D05G041700 Gossypium hirsutum HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 71.8
Sabra18G0052600 Salix brachista HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 69.0
Sed0005044 Sechium edule HOM05D003596 ORTHO05D004256 9.4e-24 113.2 71 71.8
CiPaw.15G035400 Carya illinoinensis HOM05D003596 ORTHO05D004256 1.2e-23 112.8 79 68.4
AUR62009106 Chenopodium quinoa HOM05D003596 ORTHO05D004256 1.2e-23 112.8 71 69.0
AUR62020565 Chenopodium quinoa HOM05D003596 ORTHO05D004256 1.2e-23 112.8 73 68.5
ClCG05G018100 Citrullus lanatus HOM05D003596 ORTHO05D004256 1.2e-23 112.8 71 70.4
HanXRQChr03g0071431 Helianthus annuus HOM05D003596 ORTHO05D004256 1.2e-23 112.8 71 70.4
MD15G1054300 Malus domestica HOM05D003596 ORTHO05D004256 1.2e-23 112.8 71 70.4
Aqoxy7G03993 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 1.6e-23 112.5 71 69.0
Dinv12460 Davidia involucrata HOM05D003596 ORTHO05D004256 1.6e-23 112.5 71 71.8
QL02p000417 Quercus lobata HOM05D003596 ORTHO05D004256 1.6e-23 112.5 71 70.4
MSTRG.25976 Avicennia marina HOM05D003596 ORTHO05D004256 2.1e-23 112.1 71 70.4
FvH4_2g31420 Fragaria vesca HOM05D003596 ORTHO05D004256 2.1e-23 112.1 71 73.2
Glyma.04G054100 Glycine max HOM05D003596 ORTHO05D004256 2.1e-23 112.1 71 69.0
PGR031G3048 Punica granatum HOM05D003596 ORTHO05D004256 2.1e-23 112.1 71 70.4
SalBow4G3232 Salvia bowleyana HOM05D003596 ORTHO05D004256 2.7e-23 111.7 71 71.8
Ca_15814_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 3.6e-23 111.3 71 70.4
Ca_15848_v3 Cicer arietinum L. HOM05D003596 ORTHO05D004256 3.6e-23 111.3 71 70.4
FAN15G0358 Fragaria x ananassa HOM05D003596 ORTHO05D004256 3.6e-23 111.3 65 76.9
Gorai.009G042400 Gossypium raimondii HOM05D003596 ORTHO05D004256 3.6e-23 111.3 71 70.4
Nitab4.5_0006016g0010 Nicotiana tabacum HOM05D003596 ORTHO05D004256 3.6e-23 111.3 71 70.4
Sopen08g018080 Solanum pennellii HOM05D003596 ORTHO05D004256 3.6e-23 111.3 71 69.0
Sopen08g018130 Solanum pennellii HOM05D003596 ORTHO05D004256 3.6e-23 111.3 71 69.0
Duzib150G0181 Durio zibethinus HOM05D003596 ORTHO05D004256 4.7e-23 110.9 71 69.0
Oeu018037.2 Olea europaea HOM05D003596 ORTHO05D004256 4.7e-23 110.9 71 69.0
RcHm_v2.0_Chr6g0311401 Rosa chinensis HOM05D003596 ORTHO05D004256 4.7e-23 110.9 71 71.8
VMungo1309G0065 Vigna mungo HOM05D003596 ORTHO05D004256 4.7e-23 110.9 71 67.6
PSO210G3791 Papaver somniferum HOM05D003596 ORTHO05D004256 6.1e-23 110.5 71 70.4
vmacro17443 Vaccinium macrocarpon HOM05D003596 ORTHO05D004256 6.1e-23 110.5 71 71.8
vmacro22567 Vaccinium macrocarpon HOM05D003596 ORTHO05D004256 6.1e-23 110.5 71 71.8
FAN24G3537 Fragaria x ananassa HOM05D003596 ORTHO05D004256 8.0e-23 110.2 71 71.8
Solyc08g062610.4 Solanum lycopersicum HOM05D003596 ORTHO05D004256 8.0e-23 110.2 70 70.0
CSS0012931 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 1.0e-22 109.8 71 69.0
CSS0037935 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 1.0e-22 109.8 71 69.0
CANSAT21G2424 Cannabis sativa HOM05D003596 ORTHO05D004256 1.0e-22 109.8 71 70.4
SGA_v2.0_scaffold64G21855 Striga asiatica HOM05D003596 ORTHO05D004256 1.0e-22 109.8 71 69.0
CiPaw.15G034900 Carya illinoinensis HOM05D003596 ORTHO05D004256 1.4e-22 109.4 71 70.4
Cc08_g11040 Coffea canephora HOM05D003596 ORTHO05D004256 1.4e-22 109.4 71 67.6
Eucgr.C00673 Eucalyptus grandis HOM05D003596 ORTHO05D004256 1.4e-22 109.4 71 69.0
Lj1g0006265 Lotus japonicus HOM05D003596 ORTHO05D004256 1.4e-22 109.4 71 66.2
Phvul.009G079900 Phaseolus vulgaris HOM05D003596 ORTHO05D004256 1.4e-22 109.4 71 66.2
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 1.4e-22 109.4 71 66.2
Actinidia29320 Actinidia chinensis HOM05D003596 ORTHO05D004256 1.8e-22 109.0 72 68.1
Nn8g38751 Nelumbo nucifera HOM05D003596 ORTHO05D004256 1.8e-22 109.0 65 72.3
Sopen08g018090 Solanum pennellii HOM05D003596 ORTHO05D004256 1.8e-22 109.0 71 67.6
THA.LOC104803716 Tarenaya hassleriana HOM05D003596 ORTHO05D004256 1.8e-22 109.0 71 66.2
CiPaw.15G035100 Carya illinoinensis HOM05D003596 ORTHO05D004256 2.3e-22 108.6 71 70.4
Rhsim05G0069300 Rhododendron simsii HOM05D003596 ORTHO05D004256 2.3e-22 108.6 71 69.0
Hund03308 Selenicereus undatus HOM05D003596 ORTHO05D004256 2.3e-22 108.6 71 66.2
Gorai.009G042500 Gossypium raimondii HOM05D003596 ORTHO05D004256 4.0e-22 107.8 71 69.0
Manes.16G083300 Manihot esculenta HOM05D003596 ORTHO05D004256 4.0e-22 107.8 71 67.6
TWI63G1485 Tripterygium wilfordii HOM05D003596 ORTHO05D004256 5.2e-22 107.5 71 67.6
Lj8C494T3 Lonicera japonica HOM05D003596 ORTHO05D004256 6.7e-22 107.1 71 67.6
Os06g0574100 Oryza sativa ssp. japonica HOM05D003596 ORTHO05D004256 8.8e-22 106.7 65 66.2
unitig_748.g7532 Utricularia gibba HOM05D003596 ORTHO05D004256 1.5e-21 105.9 65 69.2
Lalb_Chr08g0244911 Lupinus albus HOM05D003596 ORTHO05D004256 2.0e-21 105.5 71 66.2
Zm00001eb385240 Zea mays HOM05D003596 ORTHO05D004256 2.0e-21 105.5 65 66.2
CSS0026815 Camellia sinensis var. sinensis HOM05D003596 ORTHO05D004256 2.6e-21 105.1 71 66.2
MELO3C016893.2 Cucumis melo HOM05D003596 ORTHO05D004256 3.3e-21 104.8 71 66.2
Glyma.06G054400 Glycine max HOM05D003596 ORTHO05D004256 3.3e-21 104.8 71 64.8
GSVIVG01035424001 Vitis vinifera HOM05D003596 ORTHO05D004256 4.4e-21 104.4 70 67.1
ATR0051G014 Amborella trichopoda HOM05D003596 ORTHO05D004256 7.5e-21 103.6 71 64.8
Sopen08g018100 Solanum pennellii HOM05D000002 ORTHO05D000001 9.7e-21 103.2 71 64.8
ECA240G3089 Erigeron canadensis HOM05D003596 ORTHO05D004256 1.3e-20 102.8 70 68.6
Hma1.2p1_0732F.1_g210080 Hydrangea macrophylla HOM05D003596 ORTHO05D004256 1.3e-20 102.8 70 67.1
arahy.Tifrunner.gnm1.ann1.N0QBSQ Arachis hypogaea HOM05D003596 ORTHO05D004256 1.7e-20 102.4 64 73.4
HPP92_023980 Vanilla planifolia HOM05D003596 ORTHO05D004256 2.8e-20 101.7 65 66.2
CDE02G3165 Ceratophyllum demersum HOM05D003596 ORTHO05D004256 6.3e-20 100.5 65 66.2
Peaxi162Scf00070g00020 Petunia axillaris HOM05D003596 ORTHO05D004256 8.2e-20 100.1 66 68.2
HPP92_024003 Vanilla planifolia HOM05D003596 ORTHO05D004256 1.8e-19 99.0 65 63.1
Sc06g0001060 Simmondsia chinensis HOM05D003596 ORTHO05D004256 5.3e-19 97.4 71 62.0
Lj8A493G26 Lonicera japonica HOM05D003596 ORTHO05D004256 7.0e-19 97.1 65 67.7
SEGI_31297 Sequoiadendron giganteum HOM05D003596 ORTHO05D004256 9.1e-19 96.7 71 60.6
Mapoly0103s0018 Marchantia polymorpha HOM05D003596 ORTHO05D004256 1.7e-17 92.4 71 54.9
CBR_g6365 Chara braunii HOM05D003596 ORTHO05D004256 8.5e-17 90.1 71 52.1
AagrBONN_evm.TU.Sc2ySwM_117.2988 Anthoceros agrestis HOM05D003596 ORTHO05D004256 1.5e-16 89.4 71 54.9
Pp3c17_22760 Physcomitrium patens HOM05D003596 ORTHO05D004256 1.9e-16 89.0 65 55.4
HanXRQChr11g0345821 Helianthus annuus HOM05D003596 ORTHO05D004256 2.5e-16 88.6 57 66.7
SMO271G0076 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 1.4e-14 82.8 66 50.0
Dinv12458 Davidia involucrata HOM05D003596 ORTHO05D004256 3.0e-14 81.6 54 70.4
MBI05_g40673_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 4.0e-14 81.3 71 54.9
PSO063G3496 Papaver somniferum HOM05D003596 ORTHO05D004256 5.7e-13 77.4 72 54.2
QL02p000424 Quercus lobata HOM05D003596 ORTHO05D004256 7.5e-13 77.0 53 67.9
Atru.chr7.1921 Acer truncatum HOM05D003596 ORTHO05D004256 2.8e-12 75.1 53 62.3
MBI07_g28657_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.8e-12 75.1 70 50.0
MBI11_g17711_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.8e-12 75.1 65 52.3
PSO832G4098 Papaver somniferum HOM05D003596 ORTHO05D004256 2.8e-12 75.1 72 52.8
MCO13G046 Micromonas commoda HOM05D003596 ORTHO05D004256 1.8e-11 72.4 66 48.5
Aqoxy7G04012 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 2.4e-11 72.0 66 47.0
Aqoxy7G04015 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 3.1e-11 71.6 73 43.8
MBI05_g21322_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 2.0e-10 68.9 72 44.4
MBI05_g40674_MAGBIO Magnolia biondii HOM05D003596 ORTHO05D004256 7.7e-10 67.0 72 47.2
PSO386G0091 Papaver somniferum HOM05D003596 ORTHO05D004256 4.2e-08 61.2 67 47.8
PSO832G1397 Papaver somniferum HOM05D003596 ORTHO05D004256 7.2e-08 60.5 72 37.5
PSO229G0119 Papaver somniferum HOM05D003596 ORTHO05D004256 1.2e-07 59.7 66 39.4
SMO115G0275 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 1.6e-07 59.3 70 34.3
PSO063G0821 Papaver somniferum HOM05D003596 ORTHO05D004256 2.1e-07 58.9 66 36.4
PSO675G3982 Papaver somniferum HOM05D003596 ORTHO05D004256 2.1e-07 58.9 66 39.4
PSO675G8489 Papaver somniferum HOM05D003596 ORTHO05D004256 2.1e-07 58.9 66 39.4
Cre09.g398700 Chlamydomonas reinhardtii HOM05D003596 ORTHO05D004256 2.7e-07 58.5 73 38.4
ClCG05G018110 Citrullus lanatus HOM05D003596 ORTHO05D004256 6.1e-07 57.4 29 79.3
PSO339G1340 Papaver somniferum HOM05D003596 ORTHO05D004256 8.0e-07 57.0 66 39.4
Aqoxy7G01445 Aquilegia oxysepala HOM05D003596 ORTHO05D004256 1.0e-06 56.6 74 40.5
SMO358G0603 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 1.0e-06 56.6 65 33.8
SMO111G0057 Selaginella moellendorffii HOM05D003596 ORTHO05D004256 5.2e-06 54.3 65 33.8


User provided reference genes

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