Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 8.2e-163 577.0 296 100.0
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 1.7e-91 340.1 294 65.0
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 2.9e-91 339.3 287 64.8
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 1.1e-90 337.4 288 65.3
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 7.1e-90 334.7 288 65.3
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 2.7e-89 332.8 291 65.6
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 1.3e-88 330.5 287 64.1
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 2.3e-88 329.7 287 64.1
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 3.9e-88 328.9 287 63.4
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 1.8e-85 320.1 291 63.6
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 3.1e-85 319.3 304 60.2
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 1.3e-83 313.9 305 59.7
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 2.4e-82 309.7 289 61.6
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 6.0e-81 305.1 287 62.0
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 9.9e-76 287.7 290 54.1
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.7e-75 287.0 291 53.6
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 2.4e-74 283.1 288 54.9
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 9.3e-74 281.2 286 54.9
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 3.9e-72 275.8 287 52.6
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 8.7e-72 274.6 253 56.9
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 1.9e-71 273.5 285 54.7
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 2.5e-71 273.1 286 53.8
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 1.6e-70 270.4 249 58.6
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 3.7e-70 269.2 285 52.3
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 3.7e-70 269.2 204 67.2
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 4.8e-70 268.9 232 58.6
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 1.4e-69 267.3 280 53.6
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 5.3e-69 265.4 233 58.4
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.8e-67 259.2 282 53.2
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 4.9e-67 258.8 288 52.8
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 6.5e-67 258.5 286 52.8
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 8.4e-67 258.1 221 62.0
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 8.4e-67 258.1 243 56.4
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 5.5e-66 255.4 284 50.7
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 1.2e-65 254.2 308 49.0
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 1.6e-65 253.8 233 56.2
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 1.6e-65 253.8 235 57.0
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 1.6e-65 253.8 245 55.5
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 7.9e-65 251.5 213 61.0
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.3e-64 250.8 198 63.6
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 1.8e-64 250.4 290 50.0
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 3.9e-64 249.2 288 51.0
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 5.1e-64 248.8 240 55.0
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 6.7e-64 248.4 281 49.5
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 8.7e-64 248.1 288 50.0
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 1.5e-63 247.3 289 49.5
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 2.5e-63 246.5 200 63.0
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 5.7e-63 245.4 277 49.8
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 1.3e-62 244.2 294 48.3
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 1.6e-62 243.8 283 50.9
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.6e-62 243.8 291 49.8
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 1.6e-62 243.8 207 60.9
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 2.1e-62 243.4 228 57.0
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 2.8e-62 243.0 205 60.5
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 8.2e-62 241.5 281 47.7
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 1.8e-61 240.4 221 54.8
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 3.4e-60 236.1 210 58.1
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 4.5e-60 235.7 199 59.3
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 5.9e-60 235.3 261 51.0
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 2.2e-59 233.4 297 49.8
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 5.0e-59 232.3 267 50.2
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 5.0e-59 232.3 279 48.4
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 6.5e-59 231.9 217 56.2
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 1.1e-58 231.1 247 50.2
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 2.5e-58 229.9 223 54.3
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 3.2e-58 229.6 240 51.7
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 3.2e-58 229.6 293 48.5
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 7.2e-58 228.4 239 50.6
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 7.2e-58 228.4 247 51.8
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 7.2e-58 228.4 300 48.3
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 9.3e-58 228.0 234 52.6
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 1.2e-57 227.6 291 48.5
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 1.6e-57 227.3 300 48.0
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 4.6e-57 225.7 291 46.7
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 1.3e-56 224.2 231 50.6
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 1.8e-56 223.8 287 46.0
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 2.3e-56 223.4 274 46.4
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 3.9e-56 222.6 243 51.4
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 1.9e-55 220.3 251 46.6
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 3.3e-55 219.5 237 51.9
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 7.4e-55 218.4 347 40.6
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 2.2e-54 216.9 206 55.8
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 6.3e-54 215.3 246 48.0
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 8.2e-54 214.9 209 55.5
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 1.1e-53 214.5 211 54.5
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 4.1e-53 212.6 265 47.2
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 1.5e-52 210.7 233 48.5
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 2.6e-52 209.9 263 46.8
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 2.6e-52 209.9 278 47.1
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 1.4e-50 204.1 229 48.9
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 3.2e-50 203.0 261 44.1
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 5.5e-50 202.2 286 44.1
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 1.3e-43 181.0 199 48.7
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 3.8e-43 179.5 154 61.7
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 1.9e-42 177.2 243 44.9
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 3.6e-41 172.9 158 55.1
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 8.2e-38 161.8 156 55.1
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 7.7e-36 155.2 219 39.7
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 2.9e-35 153.3 161 54.7
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 5.0e-35 152.5 163 54.6
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 8.5e-35 151.8 248 38.3
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 1.1e-34 151.4 203 40.4
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-29 132.9 214 37.9
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 1.9e-26 124.0 158 47.5
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 4.7e-25 119.4 113 54.9
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 5.2e-24 115.9 82 64.6
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 9.8e-23 111.7 226 35.8
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 5.2e-16 89.4 104 45.2
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 6.3e-14 82.4 195 31.8
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 1.0e-11 75.1 124 36.3
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.5e-10 70.5 42 81.0


User provided reference genes

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