Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 6.0e-138 494.2 253 100.0
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 1.3e-111 406.8 251 80.1
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.6e-111 406.4 252 81.3
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 8.1e-111 404.1 247 81.8
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 1.4e-110 403.3 261 78.9
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 5.8e-109 397.9 243 81.9
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.3e-108 396.7 246 82.9
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 4.9e-108 394.8 243 83.1
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 8.4e-108 394.0 243 82.7
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 1.1e-107 393.7 243 81.9
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.4e-107 393.3 243 81.9
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 1.9e-107 392.9 254 79.5
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 8.5e-92 340.9 242 69.8
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.7e-90 335.9 236 70.3
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.8e-89 333.2 238 66.0
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 3.9e-89 332.0 265 63.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 8.7e-89 330.9 245 65.7
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 8.7e-89 330.9 248 66.9
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.1e-88 330.5 250 67.2
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.3e-87 327.0 240 65.8
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 1.3e-87 327.0 245 64.1
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 1.6e-87 326.6 226 69.5
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 2.8e-87 325.9 242 64.9
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 6.3e-87 324.7 236 66.9
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.4e-86 323.6 239 67.8
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 1.8e-86 323.2 241 64.7
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.8e-86 323.2 245 62.0
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.4e-86 322.8 241 65.1
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 3.1e-86 322.4 238 66.8
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 6.9e-86 321.2 224 70.5
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 9.1e-86 320.9 249 63.5
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 9.1e-86 320.9 240 64.6
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.4e-85 318.9 247 61.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 3.4e-85 318.9 247 64.0
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 5.9e-85 318.2 251 64.9
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 5.9e-85 318.2 252 64.3
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 7.7e-85 317.8 231 66.7
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 7.7e-85 317.8 247 63.2
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 7.7e-85 317.8 224 66.5
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 7.7e-85 317.8 232 67.7
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 7.7e-85 317.8 228 67.5
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.0e-84 317.4 246 61.8
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 2.2e-84 316.2 230 63.5
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 2.9e-84 315.8 231 64.9
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 2.9e-84 315.8 241 65.1
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.9e-84 315.8 241 64.3
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 3.8e-84 315.5 247 63.6
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 5.0e-84 315.1 246 62.2
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 6.5e-84 314.7 243 66.7
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 6.5e-84 314.7 245 64.5
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 8.5e-84 314.3 230 67.0
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 8.5e-84 314.3 223 67.7
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.1e-83 313.9 229 66.8
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 1.1e-83 313.9 237 64.1
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 1.4e-83 313.5 223 67.3
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 1.4e-83 313.5 241 64.7
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 2.5e-83 312.8 243 65.0
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.2e-83 312.4 238 63.0
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.2e-83 312.4 238 63.0
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 4.2e-83 312.0 222 68.0
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 5.5e-83 311.6 243 62.1
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 5.5e-83 311.6 222 67.1
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 9.4e-83 310.8 239 63.2
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 2.1e-82 309.7 225 67.1
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 2.7e-82 309.3 237 63.7
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 3.6e-82 308.9 251 61.0
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 3.6e-82 308.9 229 67.7
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 4.6e-82 308.5 245 60.8
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 7.9e-82 307.8 232 65.5
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.0e-81 307.4 243 64.2
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 1.8e-81 306.6 241 61.8
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 3.9e-81 305.4 239 64.9
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 5.1e-81 305.1 243 63.8
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 5.1e-81 305.1 243 61.7
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 6.7e-81 304.7 228 67.1
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 8.8e-81 304.3 241 63.5
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 3.3e-80 302.4 228 66.7
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 3.3e-80 302.4 244 62.7
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 5.7e-80 301.6 235 63.8
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 9.7e-80 300.8 202 71.3
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 1.3e-79 300.4 249 60.6
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 1.3e-79 300.4 214 67.8
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 2.2e-79 299.7 274 56.9
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 3.1e-78 295.8 242 59.5
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 3.1e-78 295.8 242 59.5
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.3e-76 290.4 222 63.5
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.7e-76 290.0 229 65.9
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 8.5e-76 287.7 217 63.6
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 1.1e-75 287.3 239 60.7
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.4e-73 280.4 229 59.8
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 1.4e-73 280.4 378 43.4
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 3.0e-73 279.3 198 68.2
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 3.9e-73 278.9 247 59.1
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 5.2e-73 278.5 263 55.5
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 3.3e-72 275.8 242 56.2
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.2e-64 250.8 237 55.7
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 8.2e-63 244.6 190 64.2
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 6.5e-60 235.0 140 82.9
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.8e-57 226.9 236 50.8
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 2.6e-56 223.0 207 57.5
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 3.4e-56 222.6 202 54.5
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 3.7e-55 219.2 241 49.0
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.1e-54 217.6 227 49.8
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 2.3e-49 199.9 173 63.6
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 4.3e-43 179.1 270 40.4
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.7e-36 157.1 115 67.0
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 9.5e-35 151.4 98 70.4
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 3.7e-31 139.4 113 54.9
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 2.3e-20 103.6 230 34.3
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.5e-19 100.9 87 59.8
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 1.7e-07 60.8 200 28.0
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 4.9e-07 59.3 194 26.3
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 1.9e-06 57.4 224 26.3
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 5.4e-06 55.8 182 25.8


User provided reference genes

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