Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 3.3e-124 448.4 223 100.0
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 4.5e-105 384.8 218 83.9
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 7.7e-105 384.0 218 83.9
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.9e-104 382.1 219 84.5
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 5.0e-104 381.3 218 82.6
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 8.5e-104 380.6 218 82.6
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 8.5e-104 380.6 218 82.6
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 8.5e-104 380.6 222 82.9
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.9e-103 379.4 221 81.9
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 3.2e-103 378.6 219 82.6
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 3.6e-102 375.2 218 82.6
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 2.3e-101 372.5 223 80.3
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.6e-100 369.0 219 81.7
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 5.7e-100 367.9 221 81.4
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.7e-99 366.3 219 79.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.8e-98 362.8 219 79.0
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.1e-95 353.6 222 78.8
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 2.0e-92 342.8 198 83.8
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-90 337.0 198 81.8
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 2.7e-89 332.4 221 74.7
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.2e-87 325.5 221 73.8
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.0e-85 318.5 216 73.1
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 8.8e-85 317.4 216 72.7
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.5e-84 316.6 216 72.2
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.0e-84 316.2 200 75.0
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 8.3e-83 310.8 209 70.3
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 8.3e-83 310.8 223 69.1
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.8e-82 309.7 222 69.4
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.8e-82 309.7 216 70.4
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 9.1e-82 307.4 218 68.8
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.0e-81 306.2 205 70.7
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.7e-81 305.8 216 69.9
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.7e-81 305.8 209 69.4
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.7e-81 305.8 223 70.0
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 5.9e-81 304.7 215 70.2
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.0e-80 303.9 217 64.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.7e-80 303.1 220 68.6
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.2e-80 302.8 209 69.9
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 2.2e-80 302.8 216 70.4
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 2.9e-80 302.4 220 65.5
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 5.0e-80 301.6 223 66.8
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 6.5e-80 301.2 225 66.7
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.5e-79 300.1 215 68.4
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 2.5e-79 299.3 204 73.0
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.5e-79 299.3 200 71.5
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.5e-79 299.3 209 66.5
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 3.2e-79 298.9 216 69.4
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 4.2e-79 298.5 218 65.6
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 4.2e-79 298.5 220 67.7
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 5.5e-79 298.1 215 68.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 5.5e-79 298.1 223 66.4
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 7.2e-79 297.7 204 71.6
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 7.2e-79 297.7 220 68.2
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 9.4e-79 297.4 209 73.2
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 9.4e-79 297.4 216 69.9
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.2e-78 297.0 204 69.6
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 1.2e-78 297.0 220 65.9
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.6e-78 296.6 219 67.1
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 2.7e-78 295.8 220 68.6
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.7e-78 295.8 204 72.1
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.7e-78 295.8 220 66.8
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 3.6e-78 295.4 216 69.0
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 4.7e-78 295.0 216 68.1
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.4e-77 293.5 217 65.4
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 4.0e-77 292.0 219 69.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.5e-76 290.0 200 67.0
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 4.4e-76 288.5 220 65.9
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 7.5e-76 287.7 219 65.3
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 9.8e-76 287.3 211 67.3
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.9e-75 285.0 219 63.9
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.9e-75 285.0 219 63.9
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.4e-74 282.7 204 66.2
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 3.1e-74 282.3 220 63.6
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 4.1e-74 282.0 219 64.8
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 4.1e-74 282.0 216 65.7
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 5.4e-74 281.6 211 62.6
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.4e-74 281.6 204 65.7
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 9.2e-74 280.8 217 63.1
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.0e-73 279.6 204 66.7
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.7e-73 279.3 216 63.4
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.5e-73 278.9 202 67.8
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.5e-73 278.5 216 65.3
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.5e-73 278.5 211 64.9
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 7.7e-73 277.7 204 66.2
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.0e-72 277.3 220 64.5
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.0e-72 277.3 204 64.2
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 1.3e-72 276.9 204 64.2
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 3.8e-72 275.4 219 60.7
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 6.6e-72 274.6 216 61.1
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 8.6e-72 274.2 204 63.2
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.1e-71 273.9 204 64.2
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 1.1e-71 273.9 216 60.6
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 3.3e-71 272.3 202 65.8
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 9.5e-71 270.8 217 59.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.1e-70 269.6 195 69.7
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.8e-70 269.2 273 54.2
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.8e-70 269.2 210 63.3
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.8e-69 266.5 215 61.9
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 3.0e-69 265.8 218 61.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 6.8e-69 264.6 219 64.8
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.0e-68 263.1 179 73.2
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 4.4e-68 261.9 205 61.5
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 5.7e-68 261.5 165 75.2
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.3e-67 260.4 217 58.5
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.3e-67 260.4 200 66.5
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 6.4e-67 258.1 212 58.0
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.1e-66 257.3 200 62.5
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.4e-66 256.9 174 70.7
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 7.0e-66 254.6 218 56.9
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.2e-65 253.8 218 60.1
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.7e-65 252.7 214 55.1
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 8.6e-64 247.7 174 69.5
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.6e-64 247.7 172 68.0
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.3e-61 239.6 213 57.7
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.3e-61 239.6 213 57.7
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 4.4e-60 235.3 165 69.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 6.4e-59 231.5 217 58.1
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.1e-58 230.7 219 54.3
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.4e-58 230.3 208 55.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 5.4e-58 228.4 155 68.4
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.0e-57 226.5 202 56.9
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 3.5e-57 225.7 156 72.4
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 7.8e-57 224.6 167 67.1
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.3e-56 223.0 221 51.1
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 8.6e-56 221.1 155 67.7
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.5e-55 220.3 171 62.6
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 8.1e-54 214.5 205 55.1
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.4e-53 213.8 220 48.2
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.2e-52 210.7 135 72.6
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 4.4e-52 208.8 213 46.0
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.4e-50 203.8 202 52.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.3e-48 197.2 219 50.2
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.5e-47 193.0 202 47.5
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.8e-45 186.8 214 49.5
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.6e-44 181.4 166 51.2
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.3e-40 170.6 109 75.2
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.3e-40 169.9 200 49.5
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.3e-39 166.0 200 47.0
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 5.6e-39 165.2 210 41.0
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 6.2e-38 161.8 136 66.2
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.4e-37 159.8 213 40.4
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 9.9e-36 154.5 157 48.4
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-35 153.7 202 39.6
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 1.7e-32 143.7 85 74.1
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.3e-31 139.0 129 58.9
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 9.6e-31 137.9 101 67.3
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 3.1e-29 132.9 205 39.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 5.8e-28 128.6 200 38.5
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.5e-25 119.4 86 66.3
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 3.9e-24 115.9 133 42.1
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.9e-24 115.9 173 45.1
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 3.6e-22 109.4 82 59.8
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-17 94.4 90 55.6
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.5e-15 87.4 66 69.7
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 5.6e-15 85.5 82 52.4
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 4.5e-12 75.9 201 34.3
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.5e-07 60.8 41 68.3


User provided reference genes

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