Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G9370 Aethionema arabicum HOM05D007582 ORTHO05D009645 1.5e-36 155.6 75 100.0
Aa31LG6G9350 Aethionema arabicum HOM05D007582 ORTHO05D009645 4.5e-17 90.9 105 50.5
Thhalv10012348m.g Eutrema salsugineum HOM05D007582 ORTHO05D009645 3.2e-15 84.7 101 49.5
BolC6t35199H Brassica oleracea HOM05D007582 ORTHO05D009645 4.2e-15 84.3 101 48.5
A06p11790 Brassica napus HOM05D007582 ORTHO05D009645 5.5e-15 84.0 97 49.5
Atru.chr13.1488 Acer truncatum HOM05D007582 ORTHO05D009645 1.6e-14 82.4 105 45.7
BcaC08g42847 Brassica carinata HOM05D007582 ORTHO05D009645 3.6e-14 81.3 101 47.5
C06p00630 Brassica napus HOM05D007582 ORTHO05D009645 3.6e-14 81.3 101 47.5
Carub.0001s3518 Capsella rubella HOM05D007582 ORTHO05D009645 8.0e-14 80.1 104 46.2
Sp1g33530 Schrenkiella parvula HOM05D007582 ORTHO05D009645 8.0e-14 80.1 101 46.5
BcaB07g33949 Brassica carinata HOM05D007582 ORTHO05D009645 1.4e-13 79.3 101 45.5
PGR042G2864 Punica granatum HOM05D007582 ORTHO05D009645 1.8e-13 79.0 109 42.2
THA.LOC104817375 Tarenaya hassleriana HOM05D007582 ORTHO05D009645 1.8e-13 79.0 109 45.9
CANSAT11G2348 Cannabis sativa HOM05D007582 ORTHO05D009645 2.3e-13 78.6 109 43.1
TAR381G0802 Trochodendron aralioides HOM05D007582 ORTHO05D009645 2.3e-13 78.6 110 43.6
CARHR035920 Cardamine hirsuta HOM05D007582 ORTHO05D009645 3.0e-13 78.2 101 45.5
AL1G52300 Arabidopsis lyrata HOM05D007582 ORTHO05D009645 4.0e-13 77.8 102 46.1
MSTRG.22408 Avicennia marina HOM05D007582 ORTHO05D009645 5.2e-13 77.4 108 43.5
AT1G44414 Arabidopsis thaliana HOM05D007582 ORTHO05D009645 8.8e-13 76.6 102 45.1
Haze_00435 Corylus avellana HOM05D007582 ORTHO05D009645 1.5e-12 75.9 111 40.5
Nn5g28305 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.5e-12 75.9 112 41.1
Oeu028565.1 Olea europaea HOM05D007582 ORTHO05D009645 1.5e-12 75.9 113 42.5
PSO528G0093 Papaver somniferum HOM05D007582 ORTHO05D009645 1.5e-12 75.9 105 43.8
Manes.18G077606 Manihot esculenta HOM05D007582 ORTHO05D009645 2.0e-12 75.5 110 41.8
PSO170G1805 Papaver somniferum HOM05D007582 ORTHO05D009645 2.6e-12 75.1 105 42.9
Migut.N03282 Erythranthe guttata HOM05D007582 ORTHO05D009645 3.4e-12 74.7 100 43.0
SGA_v2.0_scaffold28G11996 Striga asiatica HOM05D007582 ORTHO05D009645 3.4e-12 74.7 112 42.0
Manes.02G163800 Manihot esculenta HOM05D007582 ORTHO05D009645 5.7e-12 73.9 110 41.8
CiPaw.05G221000 Carya illinoinensis HOM05D007582 ORTHO05D009645 7.5e-12 73.6 109 41.3
CAN.G1040.1 Capsicum annuum HOM05D007582 ORTHO05D009645 9.7e-12 73.2 108 40.7
CAN.G1040.3 Capsicum annuum HOM05D007582 ORTHO05D009645 1.3e-11 72.8 108 40.7
TWI34G1919 Tripterygium wilfordii HOM05D007582 ORTHO05D009645 1.3e-11 72.8 112 39.3
Peaxi162Scf00051g00105 Petunia axillaris HOM05D007582 ORTHO05D009645 2.2e-11 72.0 96 44.8
Thecc.08G126100 Theobroma cacao HOM05D007582 ORTHO05D009645 2.2e-11 72.0 112 40.2
Nn1g00264 Nelumbo nucifera HOM05D007582 ORTHO05D009645 3.7e-11 71.2 111 37.8
Solyc06g060300.1 Solanum lycopersicum HOM05D007582 ORTHO05D009645 3.7e-11 71.2 106 39.6
Lj4P628T29 Lonicera japonica HOM05D007582 ORTHO05D009645 4.8e-11 70.9 108 38.9
Sopen06g020420 Solanum pennellii HOM05D007582 ORTHO05D009645 4.8e-11 70.9 106 40.6
Ciclev10002916m.g Citrus clementina HOM05D007582 ORTHO05D009645 8.3e-11 70.1 107 39.3
Cpa.g.sc64.90 Carica papaya HOM05D007582 ORTHO05D009645 1.8e-10 68.9 114 38.6
Phvul.008G160900 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.8e-10 68.9 110 40.9
Phvul.008G167875 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.8e-10 68.9 110 40.9
QL09p034466 Quercus lobata HOM05D007582 ORTHO05D009645 2.4e-10 68.6 110 40.0
Cc10_g11990 Coffea canephora HOM05D007582 ORTHO05D009645 3.1e-10 68.2 115 35.7
MD15G1347500 Malus domestica HOM05D007582 ORTHO05D009645 4.1e-10 67.8 112 39.3
RhsimUnG0092400 Rhododendron simsii HOM05D007582 ORTHO05D009645 4.1e-10 67.8 119 35.3
PGSC0003DMG400041136 Solanum tuberosum HOM05D007582 ORTHO05D009645 4.1e-10 67.8 108 38.9
ClCG08G005690 Citrullus lanatus HOM05D007582 ORTHO05D009645 5.3e-10 67.4 113 37.2
Potri.002G083100 Populus trichocarpa HOM05D007582 ORTHO05D009645 5.3e-10 67.4 114 36.0
vmacro00836 Vaccinium macrocarpon HOM05D007582 ORTHO05D009645 5.3e-10 67.4 118 35.6
Aqoxy6G00171 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 7.0e-10 67.0 110 36.4
Prupe.1G495300 Prunus persica HOM05D007582 ORTHO05D009645 7.0e-10 67.0 112 39.3
VMungo0647G1492 Vigna mungo HOM05D007582 ORTHO05D009645 9.1e-10 66.6 110 39.1
MELO3C010615.2 Cucumis melo HOM05D007582 ORTHO05D009645 1.2e-09 66.2 112 36.6
ATR0584G060 Amborella trichopoda HOM05D007582 ORTHO05D009645 1.6e-09 65.9 114 35.1
Lalb_Chr17g0343701 Lupinus albus HOM05D007582 ORTHO05D009645 1.6e-09 65.9 110 39.1
Nn3g18690 Nelumbo nucifera HOM05D007582 ORTHO05D009645 1.6e-09 65.9 100 38.0
Nitab4.5_0003719g0010 Nicotiana tabacum HOM05D007582 ORTHO05D009645 1.6e-09 65.9 111 37.8
Sc22g0004000 Simmondsia chinensis HOM05D007582 ORTHO05D009645 1.6e-09 65.9 110 37.3
Dinv07214 Davidia involucrata HOM05D007582 ORTHO05D009645 2.7e-09 65.1 42 73.8
FAN15G1067 Fragaria x ananassa HOM05D007582 ORTHO05D009645 2.7e-09 65.1 109 37.6
Duzib116G0545 Durio zibethinus HOM05D007582 ORTHO05D009645 4.5e-09 64.3 109 36.7
CSS0038396 Camellia sinensis var. sinensis HOM05D007582 ORTHO05D009645 5.9e-09 63.9 119 36.1
CDE06G0523 Ceratophyllum demersum HOM05D007582 ORTHO05D009645 5.9e-09 63.9 112 34.8
DCAR_016167 Daucus carota HOM05D007582 ORTHO05D009645 1.3e-08 62.8 101 36.6
HanXRQChr15g0465231 Helianthus annuus HOM05D007582 ORTHO05D009645 1.7e-08 62.4 104 38.5
HPP92_006841 Vanilla planifolia HOM05D007582 ORTHO05D009645 2.2e-08 62.0 119 32.8
Zm00001eb348620 Zea mays HOM05D007582 ORTHO05D009645 2.2e-08 62.0 107 38.3
SHI08583 Sapria himalayana HOM05D007582 ORTHO05D009645 3.8e-08 61.2 110 37.3
Lj1g0018777 Lotus japonicus HOM05D007582 ORTHO05D009645 5.0e-08 60.8 111 35.1
RcHm_v2.0_Chr6g0295891 Rosa chinensis HOM05D007582 ORTHO05D009645 5.0e-08 60.8 109 37.6
Hma1.2p1_0054F.1_g031010 Hydrangea macrophylla HOM05D007582 ORTHO05D009645 6.5e-08 60.5 42 64.3
Gohir.A06G045000 Gossypium hirsutum HOM05D007582 ORTHO05D009645 1.5e-07 59.3 42 64.3
Gohir.D06G045500 Gossypium hirsutum HOM05D007582 ORTHO05D009645 1.5e-07 59.3 42 64.3
Gorai.010G050500 Gossypium raimondii HOM05D007582 ORTHO05D009645 1.5e-07 59.3 42 64.3
Glyma.14G150500 Glycine max HOM05D007582 ORTHO05D009645 1.9e-07 58.9 115 34.8
Phvul.L001669 Phaseolus vulgaris HOM05D007582 ORTHO05D009645 1.9e-07 58.9 43 65.1
SMO143G0209 Selaginella moellendorffii HOM05D007582 ORTHO05D009645 2.5e-07 58.5 99 35.4
arahy.Tifrunner.gnm1.ann1.WSBZ3R Arachis hypogaea HOM05D007582 ORTHO05D009645 4.2e-07 57.8 42 61.9
Os05g0435400 Oryza sativa ssp. japonica HOM05D007582 ORTHO05D009645 5.5e-07 57.4 116 34.5
Aqoxy6G00227 Aquilegia oxysepala HOM05D007582 ORTHO05D009645 7.2e-07 57.0 103 34.0
ECA233G1368 Erigeron canadensis HOM05D007582 ORTHO05D009645 2.1e-06 55.5 98 35.7
Sed0002225 Sechium edule HOM05D007582 ORTHO05D009645 2.1e-06 55.5 115 31.3
TPR.G25776 Trifolium pratense HOM05D007582 ORTHO05D009645 2.1e-06 55.5 42 59.5
Medtr1g029990 Medicago truncatula HOM05D007582 ORTHO05D009645 3.6e-06 54.7 42 57.1
SalBow6G5334 Salvia bowleyana HOM05D007582 ORTHO05D009645 4.7e-06 54.3 40 65.0


User provided reference genes

Program Settings