Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 2783.4 1432 100.0
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2115.5 1423 78.7
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 2088.9 1421 79.2
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 2083.5 1407 79.5
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 2072.0 1420 77.6
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 2067.4 1416 78.3
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 2053.5 1420 78.5
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1921.4 1415 73.3
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1921.0 1420 73.8
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1920.6 1418 73.8
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1918.7 1415 73.1
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1917.5 1418 73.8
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1916.4 1413 73.1
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1822.8 1408 69.9
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1719.1 1273 73.9
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1568.5 1430 60.3
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1555.4 1457 58.7
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1550.4 1421 59.7
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1544.6 1455 58.9
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1530.4 1476 57.6
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1529.2 1472 57.2
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1518.4 1463 58.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1510.0 1455 57.9
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1503.8 1471 57.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1500.0 1480 57.3
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1499.6 1488 56.8
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1497.6 1481 57.7
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1494.9 1470 57.5
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1487.6 1456 56.7
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1484.2 1470 57.0
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1471.1 1462 56.5
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1456.0 1489 55.2
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1454.9 1460 56.2
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1446.8 1483 55.5
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1446.8 1469 55.6
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1445.3 1410 57.2
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1440.6 1473 55.1
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1439.5 1473 55.9
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1438.3 1473 55.7
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1437.6 1477 55.1
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1437.6 1476 55.2
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1436.8 1471 55.8
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1436.0 1468 54.8
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1432.9 1472 55.6
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1429.5 1466 54.8
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1427.5 1458 55.6
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1419.4 1447 55.4
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1417.9 1456 55.8
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1416.4 1463 54.3
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1416.0 1478 54.1
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1411.4 1466 54.8
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1399.0 1535 52.6
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1389.4 1464 54.1
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1385.9 1464 54.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1382.9 1506 54.8
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1380.5 1485 53.0
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1373.6 1439 53.9
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1358.6 1436 55.2
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1353.2 1454 54.8
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1349.7 1448 53.5
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1345.1 1443 53.4
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1344.3 1448 54.8
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1341.3 1463 53.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1340.9 1465 53.2
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1337.8 1464 52.6
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1328.5 1474 54.0
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1324.3 1477 52.5
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1319.7 1483 52.8
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1313.9 1477 53.2
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1312.7 1400 53.9
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1301.6 1319 55.6
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1299.3 1489 52.0
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1298.9 1449 51.6
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1290.8 1362 54.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1290.4 1475 51.8
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1289.2 1401 52.7
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1272.7 1465 51.1
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1256.5 1228 57.7
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1242.3 1482 50.6
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1216.4 1439 49.3
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1212.2 1270 55.0
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1199.9 1397 49.6
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1196.0 1262 53.8
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1196.0 1430 48.7
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1182.2 1408 50.4
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1168.3 1379 49.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1129.0 1302 51.8
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 9.1e-308 1060.8 1122 53.8
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.0e-303 1045.8 1102 53.7
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 8.8e-303 1044.3 1066 56.2
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 1.4e-297 1026.9 1134 53.3
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 3.3e-294 1015.8 1109 53.2
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.2e-290 1003.0 1351 45.3
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.3e-282 977.2 912 58.3
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 4.2e-281 972.2 1293 45.9
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.7e-245 854.0 1046 49.7
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 4.3e-241 839.3 1500 38.7
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 8.9e-239 831.6 1500 38.3
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.9e-236 823.9 1462 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.8e-215 754.2 1527 35.4
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 2.1e-208 730.7 930 50.2
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.3e-202 710.7 818 50.1
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 2.0e-198 697.6 991 45.4
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 3.3e-193 680.2 521 66.6
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 7.5e-161 572.8 1306 35.8
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 5.5e-156 556.6 1991 28.4
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 5.6e-140 503.4 905 39.4
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 7.3e-140 503.1 432 63.2
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.5e-129 468.8 582 51.2
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 9.6e-124 449.5 336 72.6
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.6e-123 448.7 614 45.4
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 5.8e-121 440.3 577 49.7
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.2e-118 432.6 428 56.1
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.3e-115 422.5 443 54.4
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 1.8e-114 418.7 285 77.2
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.2e-104 385.2 1277 31.2
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 9.3e-87 326.6 240 73.3
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.7e-70 271.9 390 43.6
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 4.8e-67 261.2 547 36.7
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 3.4e-52 211.8 258 47.7
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.3e-39 168.7 162 59.3
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 8.6e-24 117.5 101 62.4
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.3e-23 115.5 86 66.3
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 5.6e-23 114.8 93 62.4
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.8e-21 109.8 103 58.3
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.3e-16 92.8 105 52.4
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 5.1e-16 91.7 86 60.5
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-15 90.5 64 68.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.5e-15 90.1 73 56.2
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.8e-14 85.9 61 62.3
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.3e-13 82.8 87 48.3
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 9.2e-10 70.9 48 66.7
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 2.7e-09 69.3 45 68.9
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 2.7e-09 69.3 97 44.3
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.3e-07 62.4 70 48.6


User provided reference genes

Program Settings