Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 6.2e-78 294.3 174 100.0
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.8e-61 239.6 176 84.7
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 5.3e-61 238.0 176 83.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.3e-61 238.0 178 82.0
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 6.9e-61 237.7 175 82.3
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 6.9e-61 237.7 177 80.8
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.0e-60 236.1 174 81.6
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.0e-60 236.1 175 80.6
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.0e-60 236.1 174 81.6
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 4.5e-60 235.0 175 80.0
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.5e-60 235.0 180 80.6
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 7.7e-60 234.2 176 83.5
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 2.9e-59 232.3 178 81.5
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.1e-58 230.3 176 83.5
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.9e-58 229.6 177 79.7
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.2e-58 228.4 182 79.1
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 2.1e-57 226.1 176 80.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.3e-56 222.6 179 81.0
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 8.8e-56 220.7 212 67.5
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.3e-48 196.1 172 77.3
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 8.8e-48 194.1 182 69.8
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.6e-47 192.6 172 76.7
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 5.7e-47 191.4 172 77.3
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 9.7e-47 190.7 182 66.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 4.8e-46 188.3 190 71.6
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.1e-45 187.2 176 64.8
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.4e-45 186.8 176 64.2
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.8e-45 186.4 179 66.5
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.1e-45 185.3 181 73.5
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 4.1e-45 185.3 175 71.4
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.0e-45 184.5 171 71.3
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.0e-45 184.5 191 68.6
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 9.1e-45 184.1 179 68.7
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.2e-44 183.7 173 69.4
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.2e-44 183.7 177 63.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.6e-44 183.3 176 71.6
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.6e-44 183.3 176 67.6
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.0e-44 183.0 190 69.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 2.6e-44 182.6 186 61.3
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.5e-44 182.2 181 60.8
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.5e-44 181.8 175 62.3
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 4.5e-44 181.8 191 68.1
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 4.5e-44 181.8 176 64.2
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 5.9e-44 181.4 195 62.1
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 5.9e-44 181.4 173 69.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.0e-43 180.6 181 69.1
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.3e-43 180.3 183 66.1
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-43 180.3 171 67.3
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.3e-43 180.3 190 68.9
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.7e-43 179.9 186 68.3
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.7e-43 179.9 192 66.7
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.2e-43 179.5 181 71.3
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.2e-43 179.5 186 64.5
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.2e-43 179.5 184 61.4
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 3.8e-43 178.7 186 70.4
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.8e-43 178.7 147 78.2
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.8e-43 178.7 181 65.2
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.0e-43 178.3 147 77.6
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.0e-43 178.3 185 60.0
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 5.0e-43 178.3 191 66.5
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 5.0e-43 178.3 149 70.5
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 8.5e-43 177.6 188 65.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 8.5e-43 177.6 183 61.7
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 8.5e-43 177.6 177 66.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.1e-42 177.2 152 75.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.1e-42 177.2 154 72.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.5e-42 176.8 166 65.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 1.5e-42 176.8 178 61.2
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 1.9e-42 176.4 186 68.3
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.5e-42 176.0 186 67.7
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.5e-42 176.0 187 67.9
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.5e-42 176.0 175 62.3
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.2e-42 175.6 166 74.7
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 3.2e-42 175.6 148 64.2
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 4.2e-42 175.3 165 73.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 4.2e-42 175.3 187 66.8
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 5.5e-42 174.9 148 64.9
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 7.2e-42 174.5 181 66.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 7.2e-42 174.5 146 78.8
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 7.2e-42 174.5 186 64.5
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 9.4e-42 174.1 177 58.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 9.4e-42 174.1 182 66.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.2e-41 173.7 174 70.1
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.6e-41 173.3 193 63.2
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.6e-41 173.3 159 62.9
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.1e-41 172.9 173 68.8
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.7e-41 172.6 193 62.7
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 3.6e-41 172.2 191 67.0
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 8.0e-41 171.0 193 55.4
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 8.0e-41 171.0 190 66.3
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.0e-40 170.6 166 66.3
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.4e-40 170.2 177 67.8
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.8e-40 169.9 185 65.9
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.3e-40 169.5 180 64.4
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 5.2e-40 168.3 157 72.6
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 6.7e-40 167.9 193 64.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.2e-39 167.2 184 66.3
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.3e-39 165.6 192 58.3
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 4.4e-39 165.2 137 73.0
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 5.7e-39 164.9 171 66.7
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 7.5e-39 164.5 186 62.4
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.7e-39 164.1 171 67.8
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.3e-38 163.7 195 59.5
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.3e-38 163.7 186 61.3
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 2.8e-38 162.5 176 59.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.8e-38 162.5 137 76.6
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.4e-37 160.2 175 61.7
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.4e-37 160.2 176 66.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.1e-37 159.1 136 73.5
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.1e-37 158.7 175 63.4
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.6e-36 156.8 146 63.0
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.7e-36 156.0 172 63.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.0e-35 154.1 191 56.5
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 8.5e-35 151.0 190 49.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.1e-34 150.6 179 62.6
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.5e-34 149.4 177 61.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.2e-33 147.1 85 84.7
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 2.1e-33 146.4 84 85.7
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.7e-33 146.0 88 83.0
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.0e-32 144.1 146 56.8
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.3e-32 142.9 162 63.6
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 9.8e-31 137.5 155 61.9
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.3e-30 137.1 163 60.7
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.7e-30 136.7 170 61.8
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 3.5e-28 129.0 75 84.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.2e-26 122.1 70 84.3
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.1e-25 119.8 68 88.2
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 2.8e-25 119.4 111 58.6
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.8e-25 119.4 69 79.7
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.6e-23 112.8 145 58.6
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 2.6e-23 112.8 141 64.5
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 5.7e-23 111.7 110 72.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.3e-22 108.2 178 48.3
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 2.4e-21 106.3 84 60.7
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 4.5e-20 102.1 104 58.7
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.7e-19 100.1 80 60.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 6.6e-19 98.2 82 57.3
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 5.6e-18 95.1 80 55.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 6.1e-17 91.7 115 67.0
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 5.2e-16 88.6 170 51.8
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.9e-14 82.8 54 79.6
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 3.5e-12 75.9 142 57.7
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 7.3e-10 68.2 67 50.7
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.7e-06 57.0 39 59.0
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 6.4e-06 55.1 140 47.9


User provided reference genes

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