Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 7.5e-256 886.7 456 100.0
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.1e-205 719.2 466 80.0
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.0e-200 702.6 461 79.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.5e-197 691.8 465 76.3
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.1e-193 680.2 463 75.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.4e-193 679.1 466 75.3
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 6.9e-193 677.6 466 74.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 5.5e-182 641.3 464 73.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 5.5e-182 641.3 464 73.7
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 7.9e-181 637.5 465 73.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.3e-180 636.0 464 73.5
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.3e-180 636.0 462 72.9
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.3e-163 578.6 473 65.5
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.8e-124 450.3 475 56.6
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 6.8e-124 448.4 475 55.8
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.2e-123 447.6 475 56.4
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.2e-123 447.6 475 56.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.3e-122 441.8 465 55.7
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 4.1e-121 439.1 473 55.0
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-120 437.6 467 55.7
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 6.6e-119 431.8 476 53.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.3e-118 429.1 480 51.0
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.4e-115 419.1 371 66.6
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 5.8e-115 418.7 496 50.0
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 6.4e-114 415.2 493 50.5
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 7.0e-113 411.8 473 49.7
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.6e-112 410.6 473 50.3
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.7e-111 407.1 484 51.2
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.7e-111 407.1 471 49.9
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 5.0e-111 405.6 501 49.9
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 8.6e-111 404.8 455 49.2
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.5e-110 403.3 505 47.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.3e-110 402.9 479 49.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 7.3e-110 401.7 469 50.1
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.2e-109 401.0 526 46.8
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.8e-109 399.8 462 48.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.1e-108 397.9 484 48.6
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.3e-108 396.7 465 51.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 5.2e-108 395.6 448 49.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.5e-107 394.0 490 47.6
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 4.4e-107 392.5 490 47.8
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.9e-106 389.8 453 50.8
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.9e-106 389.0 490 47.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 8.3e-106 388.3 483 46.4
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.4e-105 387.5 479 46.6
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.9e-105 387.1 535 44.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.2e-105 386.3 472 49.6
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 7.0e-105 385.2 471 48.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 7.0e-105 385.2 485 48.2
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 9.2e-105 384.8 485 48.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.6e-104 384.0 484 47.5
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.6e-104 384.0 479 46.3
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.0e-103 381.3 488 46.9
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.3e-103 380.9 496 47.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.0e-103 379.8 468 46.8
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 6.6e-103 378.6 504 46.2
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 8.6e-103 378.3 495 47.3
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.5e-102 377.5 484 47.5
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.5e-102 376.7 471 49.3
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.5e-102 376.7 469 46.5
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.3e-102 375.9 523 45.1
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.3e-102 375.9 523 45.1
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.3e-102 375.9 469 46.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.1e-101 373.6 502 45.2
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.8e-101 373.2 486 45.9
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.2e-101 372.1 469 45.8
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.3e-100 370.2 475 47.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.1e-100 369.8 513 45.4
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.2e-99 367.9 464 44.8
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.5e-99 367.5 483 47.2
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.3e-98 364.4 480 47.1
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.3e-98 364.4 480 45.2
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.3e-98 364.4 470 47.2
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.3e-98 364.4 468 47.0
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.1e-97 361.3 484 45.7
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.1e-97 361.3 480 46.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.9e-97 360.5 470 46.2
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.4e-97 360.1 470 46.2
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.1e-97 359.4 470 46.4
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 9.2e-97 358.2 519 43.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.2e-96 357.8 509 42.8
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.6e-96 355.9 473 47.4
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.7e-95 354.0 480 46.5
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.7e-95 354.0 511 43.8
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 5.1e-95 352.4 510 43.1
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 3.6e-93 346.3 392 47.4
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 6.2e-93 345.5 335 56.4
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 4.0e-92 342.8 462 45.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 5.2e-92 342.4 470 45.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.5e-91 340.9 401 48.6
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.0e-91 340.5 489 44.6
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 9.9e-91 338.2 466 44.6
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.3e-90 337.8 401 47.9
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.8e-90 336.3 389 46.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.8e-90 336.3 389 46.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.4e-90 335.5 428 49.5
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 6.4e-90 335.5 461 43.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.3e-87 327.0 441 44.4
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 2.1e-85 320.5 465 42.2
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-83 314.3 446 45.1
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 2.6e-83 313.5 368 48.4
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.3e-82 311.2 484 41.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.2e-80 304.7 467 42.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.9e-79 299.7 471 41.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.3e-78 296.6 551 37.7
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.3e-78 296.2 368 48.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 9.6e-78 295.0 465 41.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.4e-75 286.6 467 40.9
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.9e-74 283.5 457 41.1
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.9e-73 280.8 473 41.0
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.2e-73 279.6 461 41.0
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 3.0e-71 273.5 400 45.2
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.8e-68 264.2 390 41.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.2e-67 261.5 335 46.9
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.4e-66 255.4 436 40.8
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.3e-61 241.5 464 36.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 6.2e-61 239.2 476 35.9
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 3.2e-57 226.9 479 35.9
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 4.2e-57 226.5 464 36.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 9.3e-57 225.3 346 40.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.3e-55 221.5 408 37.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.8e-55 221.1 485 35.3
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 5.3e-52 209.5 735 26.7
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.1e-41 175.3 650 26.0
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.8e-39 167.9 211 47.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.7e-38 162.2 237 42.6
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.5e-35 153.7 206 44.2
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.0e-34 152.1 210 46.7
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.1e-33 148.7 475 27.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.0e-31 142.1 296 33.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.5e-30 138.3 611 25.4
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.1e-28 132.1 604 24.5
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.0e-22 111.3 228 35.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 3.3e-22 110.5 217 36.4
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 4.8e-21 106.7 524 23.7
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 6.3e-21 106.3 216 38.4
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.1e-20 103.6 141 41.1
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 4.5e-19 100.1 202 35.6
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 7.7e-19 99.4 167 34.1
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 5.0e-18 96.7 201 33.8
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.2e-16 92.0 204 33.3
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.6e-16 91.7 103 49.5
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 3.6e-16 90.5 309 26.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.0e-16 89.4 211 33.2
Aa31LG6G7990 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.0e-15 89.0 59 78.0
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.0e-15 89.0 145 40.7
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.4e-15 88.6 242 28.5
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 5.2e-15 86.7 155 40.6
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 8.8e-15 85.9 193 33.7
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 4.8e-13 80.1 69 49.3
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 7.7e-11 72.8 104 43.3
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.3e-10 72.0 599 21.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.0e-10 70.1 209 27.3
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.5e-09 67.8 107 44.9
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.6e-08 65.1 178 33.7
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.8e-08 64.3 117 45.3
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 6.1e-08 63.2 184 31.5
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 1.0e-07 62.4 245 28.6
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.8e-07 61.6 256 28.1
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.8e-07 61.6 97 40.2
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.3e-07 61.2 67 44.8
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 3.0e-07 60.8 118 32.2
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 6.8e-07 59.7 143 32.2
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 6.8e-07 59.7 179 29.6
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 6.8e-07 59.7 179 29.6
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 6.8e-07 59.7 179 29.6
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.2e-06 58.9 90 37.8
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.2e-06 58.9 136 31.6
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.0e-06 58.2 96 38.5
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 2.6e-06 57.8 180 31.7
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 2.6e-06 57.8 90 36.7
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 2.6e-06 57.8 90 36.7
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 2.6e-06 57.8 90 36.7
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 2.6e-06 57.8 90 36.7
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.6e-06 57.8 145 30.3
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 2.6e-06 57.8 179 28.5
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 3.4e-06 57.4 90 37.8
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 4.4e-06 57.0 90 34.4
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 4.4e-06 57.0 128 32.8
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 5.7e-06 56.6 111 33.3
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 5.7e-06 56.6 132 31.8
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 5.7e-06 56.6 46 52.2
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 7.5e-06 56.2 197 30.5
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 9.8e-06 55.8 254 27.6


User provided reference genes

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