Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G7310 Aethionema arabicum HOM05D003846 ORTHO05D058653 6.1e-45 183.7 89 100.0
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 1.3e-10 69.7 38 86.8
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 3.1e-09 65.1 41 82.9
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 3.1e-09 65.1 34 88.2
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 5.4e-09 64.3 32 93.8
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 9.2e-09 63.5 32 90.6
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 9.2e-09 63.5 32 90.6
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 9.2e-09 63.5 39 79.5
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 5.9e-08 60.8 32 84.4
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 7.8e-08 60.5 32 84.4
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 78.1
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 81.2
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 84.4
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 81.2
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 81.2
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 84.4
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 1.0e-07 60.1 30 86.7
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 84.4
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 1.0e-07 60.1 32 84.4
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 78.1
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.3e-07 59.7 32 81.2
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 1.7e-07 59.3 32 84.4
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.7e-07 59.3 32 81.2
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 1.7e-07 59.3 31 83.9
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.7e-07 59.3 32 81.2
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.7e-07 59.3 32 81.2
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 1.7e-07 59.3 32 81.2
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 1.7e-07 59.3 30 86.7
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 1.7e-07 59.3 32 78.1
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.7e-07 59.3 30 86.7
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 84.4
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 84.4
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 78.1
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 2.3e-07 58.9 32 81.2
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 81.2
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 78.1
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 78.1
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 78.1
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 2.9e-07 58.5 30 86.7
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 78.1
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 2.9e-07 58.5 30 86.7
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 78.1
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 78.1
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 81.2
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 84.4
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.9e-07 58.5 32 84.4
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 81.2
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 81.2
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 3.9e-07 58.2 30 86.7
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 81.2
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 3.9e-07 58.2 32 78.1
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 5.0e-07 57.8 30 86.7
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 5.0e-07 57.8 32 78.1
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 5.0e-07 57.8 32 78.1
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 5.0e-07 57.8 32 78.1
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 5.0e-07 57.8 32 81.2
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 5.0e-07 57.8 30 86.7
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 5.0e-07 57.8 30 86.7
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 5.0e-07 57.8 30 86.7
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 5.0e-07 57.8 32 78.1
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 6.6e-07 57.4 32 75.0
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 6.6e-07 57.4 32 78.1
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 6.6e-07 57.4 32 78.1
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 6.6e-07 57.4 32 78.1
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 8.6e-07 57.0 32 78.1
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 8.6e-07 57.0 32 75.0
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 8.6e-07 57.0 30 83.3
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 8.6e-07 57.0 32 78.1
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 8.6e-07 57.0 38 65.8
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 1.1e-06 56.6 32 78.1
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 1.1e-06 56.6 32 78.1
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.1e-06 56.6 32 78.1
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 1.1e-06 56.6 30 83.3
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 1.1e-06 56.6 32 75.0
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 1.1e-06 56.6 30 83.3
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 1.1e-06 56.6 32 81.2
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.5e-06 56.2 30 83.3
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 1.5e-06 56.2 30 83.3
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.5e-06 56.2 30 83.3
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 1.5e-06 56.2 32 78.1
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 1.9e-06 55.8 32 75.0
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.9e-06 55.8 32 75.0
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 1.9e-06 55.8 32 75.0
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 2.5e-06 55.5 32 78.1
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 2.5e-06 55.5 30 83.3
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 2.5e-06 55.5 30 83.3
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 2.5e-06 55.5 30 76.7
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.3e-06 55.1 32 75.0
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 3.3e-06 55.1 32 78.1
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 3.3e-06 55.1 30 80.0
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 3.3e-06 55.1 30 73.3
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 4.3e-06 54.7 32 75.0
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 4.3e-06 54.7 32 81.2
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 5.6e-06 54.3 30 80.0
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 5.6e-06 54.3 32 78.1
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 5.6e-06 54.3 30 73.3
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 7.3e-06 53.9 32 71.9
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 7.3e-06 53.9 31 74.2
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 7.3e-06 53.9 32 75.0
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 7.3e-06 53.9 32 75.0
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 7.3e-06 53.9 30 80.0
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 9.5e-06 53.5 32 75.0
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 9.5e-06 53.5 46 56.5
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 9.5e-06 53.5 32 71.9


User provided reference genes

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