Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 8.4e-166 587.0 312 100.0
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 2.0e-114 416.4 313 73.5
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 2.0e-114 416.4 313 73.5
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 2.6e-114 416.0 307 74.3
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 4.4e-114 415.2 307 73.3
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 4.4e-114 415.2 313 72.8
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 5.7e-114 414.8 313 73.2
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.7e-113 413.3 315 72.1
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 3.7e-113 412.1 307 73.3
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 8.2e-113 411.0 315 72.7
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 7.7e-111 404.4 313 71.9
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 6.1e-108 394.8 315 71.1
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 8.5e-102 374.4 309 68.3
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 1.5e-77 293.9 253 64.4
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 1.6e-76 290.4 313 55.3
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 3.6e-76 289.3 301 55.1
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 3.0e-75 286.2 294 55.1
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 4.4e-74 282.3 278 59.0
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 9.8e-74 281.2 247 60.3
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 1.7e-73 280.4 278 57.2
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.2e-73 280.0 261 58.6
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 2.2e-73 280.0 261 58.6
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.2e-73 280.0 255 59.2
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 2.9e-73 279.6 255 59.2
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 3.7e-73 279.3 181 80.1
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 4.9e-73 278.9 261 58.6
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 1.4e-72 277.3 277 55.6
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 2.4e-72 276.6 246 60.2
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 3.2e-72 276.2 320 52.2
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 3.2e-72 276.2 247 59.9
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 9.2e-72 274.6 305 51.1
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 9.2e-72 274.6 299 52.8
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 9.2e-72 274.6 245 58.4
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 2.7e-71 273.1 244 62.3
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 4.6e-71 272.3 253 56.9
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 2.3e-70 270.0 250 59.2
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 1.1e-69 267.7 319 50.2
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 3.3e-69 266.2 239 60.3
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 7.3e-69 265.0 257 57.2
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.2e-68 264.2 309 52.1
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 2.1e-68 263.5 236 58.1
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 6.2e-68 261.9 252 56.7
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 6.2e-68 261.9 285 52.6
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 2.3e-67 260.0 256 55.5
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 4.0e-67 259.2 307 50.2
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 5.2e-67 258.8 284 52.8
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 6.8e-67 258.5 313 49.8
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 5.8e-66 255.4 277 54.2
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 5.8e-66 255.4 277 53.8
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 5.8e-66 255.4 277 54.2
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 5.8e-66 255.4 310 50.0
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 5.8e-66 255.4 281 52.7
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 1.7e-65 253.8 342 45.6
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 2.2e-65 253.4 249 57.0
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 3.7e-65 252.7 297 51.5
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 4.9e-65 252.3 302 50.3
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 1.1e-64 251.1 281 53.0
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 1.1e-64 251.1 253 56.5
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 1.9e-64 250.4 268 53.7
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 3.2e-64 249.6 293 51.9
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 3.2e-64 249.6 240 55.0
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.1e-64 249.2 265 54.3
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 4.1e-64 249.2 286 52.1
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 1.2e-63 247.7 309 48.9
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 4.6e-63 245.7 289 51.6
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 1.0e-62 244.6 290 48.6
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 2.3e-62 243.4 248 54.4
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 3.0e-62 243.0 252 54.0
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 8.6e-62 241.5 308 47.1
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 4.3e-61 239.2 242 54.1
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 4.3e-61 239.2 237 56.5
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 9.5e-61 238.0 276 51.1
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 1.2e-60 237.7 241 52.7
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 2.1e-60 236.9 284 50.4
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 2.1e-60 236.9 251 52.6
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 4.7e-60 235.7 292 47.3
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 4.7e-60 235.7 247 52.2
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 6.2e-60 235.3 297 48.5
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 3.1e-59 233.0 257 50.2
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 1.5e-58 230.7 279 49.8
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 2.0e-58 230.3 248 52.4
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 2.6e-58 229.9 246 52.4
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 2.6e-58 229.9 264 51.9
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 1.7e-57 227.3 246 51.6
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 9.2e-56 221.5 249 50.6
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 4.6e-55 219.2 253 48.6
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 1.3e-54 217.6 250 49.6
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 3.9e-54 216.1 257 47.5
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 1.1e-53 214.5 253 50.2
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 2.1e-52 210.3 273 48.7
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 5.2e-51 205.7 237 48.9
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 2.9e-49 199.9 266 47.7
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 1.9e-48 197.2 229 49.8
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 4.6e-47 192.6 307 42.0
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 1.3e-46 191.0 261 46.0
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.9e-46 189.5 255 46.3
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 1.1e-45 188.0 307 40.7
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 3.4e-42 176.4 288 42.0
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.9e-41 173.3 253 45.1
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 2.4e-40 170.2 227 44.1
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 6.0e-39 165.6 182 48.9
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 1.9e-37 160.6 187 54.0
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.3e-33 147.9 140 60.7
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 1.7e-33 147.5 245 38.8
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 1.4e-32 144.4 136 62.5
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.4e-32 144.4 243 39.5
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 7.9e-31 138.7 253 37.9
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 4.3e-29 132.9 183 41.0
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 1.3e-28 131.3 219 39.7
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 1.3e-28 131.3 249 36.5
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.2e-25 120.6 163 51.5
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 9.3e-24 115.2 265 35.5
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 1.3e-22 111.3 139 43.2
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 3.0e-22 110.2 116 53.4
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 3.9e-22 109.8 327 30.6
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 1.4e-19 101.3 222 37.4
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 4.9e-17 92.8 232 31.9
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 8.7e-14 82.0 136 37.5
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 5.7e-13 79.3 256 30.1
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.4e-08 64.7 58 53.4


User provided reference genes

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