Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.6e-88 328.2 162 100.0
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.0e-74 282.0 161 85.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.6e-67 258.1 159 77.4
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 8.7e-66 253.8 147 79.6
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 9.6e-65 250.4 147 78.2
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.6e-64 249.6 147 78.2
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 8.1e-64 247.3 147 78.2
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.9e-63 244.2 147 76.9
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.6e-62 242.3 147 76.9
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.0e-61 240.4 156 72.4
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 8.4e-61 237.3 156 71.2
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.1e-60 236.9 161 68.9
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.4e-60 236.5 161 70.8
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.5e-60 234.6 156 70.5
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 5.5e-60 234.6 156 69.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 4.6e-59 231.5 150 72.0
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 6.3e-56 221.1 161 66.5
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.1e-55 218.8 147 68.7
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 5.3e-55 218.0 145 69.0
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.0e-53 213.8 149 65.8
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.7e-53 213.0 149 66.4
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-53 212.6 165 61.2
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-53 212.6 122 78.7
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-53 212.6 165 61.2
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.9e-53 212.2 165 61.2
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.9e-53 212.2 122 78.7
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.0e-53 211.5 149 64.4
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 6.5e-53 211.1 165 60.6
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 6.5e-53 211.1 165 60.6
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 6.5e-53 211.1 165 60.6
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 8.4e-53 210.7 151 63.6
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.4e-52 209.9 149 65.8
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 2.5e-52 209.1 155 63.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.2e-52 208.8 159 62.3
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 7.2e-52 207.6 151 62.3
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 9.3e-52 207.2 147 68.7
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.2e-51 206.8 148 63.5
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.1e-51 206.1 146 65.8
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.3e-50 202.6 157 61.8
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.3e-50 202.6 162 61.7
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.0e-50 202.2 159 60.4
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.1e-50 201.4 159 61.0
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 6.7e-50 201.1 145 64.1
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.5e-49 199.1 159 60.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.5e-49 199.1 146 63.0
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.5e-49 199.1 157 61.1
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.5e-49 199.1 158 58.2
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 4.3e-49 198.4 160 57.5
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 7.4e-49 197.6 151 59.6
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.4e-49 197.6 146 62.3
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.3e-48 196.8 159 57.9
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.6e-48 196.4 160 59.4
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.2e-48 196.1 159 58.5
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.8e-48 195.7 154 59.7
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 2.8e-48 195.7 161 57.8
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 4.8e-48 194.9 146 62.3
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 4.8e-48 194.9 161 57.8
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 6.3e-48 194.5 159 59.1
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 6.3e-48 194.5 146 62.3
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.1e-47 193.7 156 57.7
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.1e-47 193.7 157 59.2
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.1e-47 193.7 157 59.9
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 2.4e-47 192.6 146 62.3
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 2.4e-47 192.6 146 63.0
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 3.1e-47 192.2 151 58.9
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 4.1e-47 191.8 146 61.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 4.1e-47 191.8 158 58.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 5.3e-47 191.4 160 56.9
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 6.9e-47 191.0 151 58.9
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 9.0e-47 190.7 146 61.6
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.2e-46 190.3 146 62.3
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.2e-46 190.3 160 56.2
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.2e-46 190.3 160 56.2
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.6e-46 189.1 156 59.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.6e-46 189.1 156 59.0
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 2.6e-46 189.1 145 58.6
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 4.5e-46 188.3 155 58.7
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.5e-46 188.3 151 57.0
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 4.5e-46 188.3 145 60.7
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 5.9e-46 188.0 151 57.0
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 5.9e-46 188.0 151 57.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 5.9e-46 188.0 146 61.0
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 5.9e-46 188.0 159 56.6
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 7.7e-46 187.6 160 54.4
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 7.7e-46 187.6 160 56.9
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.7e-46 187.6 144 60.4
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 7.7e-46 187.6 146 59.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 7.7e-46 187.6 145 58.6
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.0e-45 187.2 159 56.0
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.0e-45 187.2 159 57.2
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.3e-45 186.8 159 59.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.7e-45 186.4 146 58.9
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 1.7e-45 186.4 146 58.2
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.2e-45 186.0 146 58.2
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 2.9e-45 185.7 161 55.3
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 6.5e-45 184.5 145 59.3
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 8.5e-45 184.1 160 55.0
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.5e-45 184.1 146 59.6
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.9e-44 183.0 159 55.3
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.9e-44 183.0 155 56.1
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 4.2e-44 181.8 146 55.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 9.4e-44 180.6 147 58.5
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.6e-43 179.9 146 56.2
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.7e-43 179.1 146 59.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.7e-43 179.1 161 53.4
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.0e-42 177.2 146 57.5
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.0e-42 177.2 133 60.9
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.4e-42 176.8 157 54.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.4e-42 176.8 122 67.2
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.1e-42 174.9 145 57.2
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.7e-42 174.5 147 56.5
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 6.7e-42 174.5 147 56.5
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.7e-42 174.5 147 56.5
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.7e-42 174.5 147 56.5
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 8.8e-42 174.1 148 56.1
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 3.3e-41 172.2 156 54.5
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 3.3e-41 172.2 156 54.5
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 4.3e-41 171.8 159 54.7
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 9.7e-41 170.6 145 53.8
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 2.8e-40 169.1 126 61.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 3.7e-40 168.7 148 55.4
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-39 167.2 157 52.9
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.1e-39 167.2 148 53.4
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.9e-39 164.5 145 53.1
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.0e-37 160.6 146 52.7
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 6.5e-37 157.9 146 48.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 9.4e-36 154.1 145 51.7
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-35 153.7 151 49.7
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.0e-34 150.6 155 48.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 7.4e-33 144.4 160 48.1
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 4.8e-32 141.7 106 59.4
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.3e-29 133.7 106 58.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 3.8e-29 132.1 134 50.0
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.8e-29 132.1 71 78.9
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 8.5e-29 131.0 106 57.5
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-28 130.6 146 45.9
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-28 130.2 146 45.2
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.5e-28 130.2 106 53.8
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 2.5e-28 129.4 106 56.6
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 4.2e-28 128.6 158 43.0
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 8.8e-26 120.9 81 65.4
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 8.8e-26 120.9 114 52.6
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 7.7e-22 107.8 115 48.7
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.5e-20 102.8 58 72.4
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.4e-17 92.4 68 61.8
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 4.4e-17 92.0 86 50.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 4.8e-16 88.6 135 35.6
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.5e-14 82.4 107 40.2
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 3.8e-13 79.0 67 50.7
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.8e-10 70.1 58 53.4
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 2.3e-10 69.7 104 37.5
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 4.0e-10 68.9 65 47.7
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.2e-09 67.4 59 57.6
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.0e-09 66.6 58 51.7
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 4.4e-09 65.5 147 34.0
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 7.5e-09 64.7 70 44.3
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 7.5e-09 64.7 41 65.9
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-08 63.9 84 40.5
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 6.3e-08 61.6 156 28.8


User provided reference genes

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