Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.1e-37 157.9 78 100.0
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.2e-25 119.4 75 82.7
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.1e-25 118.6 75 77.3
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 8.0e-25 116.7 75 80.0
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.0e-25 116.7 75 77.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 8.0e-25 116.7 85 71.8
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.8e-24 115.5 75 77.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-23 112.5 74 74.3
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.0e-23 112.1 76 75.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 2.0e-23 112.1 75 74.7
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.4e-23 110.9 76 77.6
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 7.5e-23 110.2 75 73.3
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.1e-21 106.3 72 72.2
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-21 105.9 76 75.0
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.4e-21 105.1 72 70.8
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.4e-21 105.1 72 70.8
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.4e-21 104.0 74 74.3
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 75.3
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 75.3
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.3e-19 99.4 77 67.5
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.0e-19 97.4 80 66.2
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.0e-19 97.4 80 66.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.6e-19 97.1 80 65.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 6.6e-19 97.1 80 65.0
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 8.6e-19 96.7 80 66.2
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 3.3e-18 94.7 80 62.5
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.2e-18 94.4 76 68.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 9.5e-18 93.2 80 63.8
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.2e-17 92.8 81 61.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.2e-17 92.8 77 62.3
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.2e-17 92.8 80 62.5
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.1e-17 92.0 80 61.2
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.6e-17 91.3 80 66.2
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.7e-17 90.9 81 61.7
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.1e-17 90.5 76 63.2
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 2.3e-16 88.6 73 63.0
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 2.3e-16 88.6 73 63.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.3e-16 88.6 75 61.3
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.0e-16 88.2 75 62.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.0e-16 88.2 82 57.3
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 4.0e-16 87.8 79 62.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.2e-16 87.4 78 60.3
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 8.9e-16 86.7 80 58.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 1.5e-15 85.9 78 57.7
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.6e-15 85.1 77 61.0
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 2.6e-15 85.1 75 56.0
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 3.4e-15 84.7 81 58.0
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.7e-15 84.0 78 59.0
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 5.7e-15 84.0 80 57.5
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 7.5e-15 83.6 85 54.1
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 9.8e-15 83.2 75 60.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.3e-14 82.8 78 55.1
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 1.3e-14 82.8 80 57.5
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.3e-14 82.8 82 56.1
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.2e-14 82.0 75 64.0
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.7e-14 81.3 81 55.6
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 3.7e-14 81.3 75 57.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 3.7e-14 81.3 77 58.4
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.7e-14 81.3 76 56.6
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.7e-14 81.3 85 55.3
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 4.9e-14 80.9 81 56.8
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.9e-14 80.9 77 58.4
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 6.3e-14 80.5 83 51.8
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 6.3e-14 80.5 77 58.4
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.3e-14 80.5 77 58.4
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 8.3e-14 80.1 75 58.7
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.1e-13 79.7 75 56.0
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-13 79.3 79 55.7
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.8e-13 79.0 78 55.1
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.8e-13 79.0 78 57.7
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 4.1e-13 77.8 79 54.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.1e-13 77.8 77 53.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 4.1e-13 77.8 69 58.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 4.1e-13 77.8 85 54.1
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 5.4e-13 77.4 76 50.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.4e-13 77.4 80 53.8
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 9.2e-13 76.6 87 51.7
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-12 76.3 77 53.2
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.2e-12 76.3 85 51.8
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 53.8
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 52.5
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 52.5
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.6e-12 75.9 77 51.9
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.6e-12 75.9 86 52.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-12 75.9 91 51.6
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.6e-12 75.9 91 51.6
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-12 75.5 77 53.2
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-12 75.5 77 53.2
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.7e-12 75.1 83 54.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.5e-12 74.7 91 50.5
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 3.5e-12 74.7 89 53.9
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.6e-12 74.3 74 56.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 4.6e-12 74.3 79 51.9
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.9e-12 73.9 77 51.9
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.9e-12 73.9 79 53.2
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 7.8e-12 73.6 79 54.4
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 7.8e-12 73.6 91 49.5
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 7.8e-12 73.6 82 52.4
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 7.8e-12 73.6 72 56.9
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 7.8e-12 73.6 79 53.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.0e-11 73.2 76 57.9
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.3e-11 72.8 72 52.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.3e-11 72.8 80 53.8
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.3e-11 72.8 76 52.6
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.7e-11 72.4 79 51.9
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.3e-11 72.0 79 50.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.3e-11 72.0 89 47.2
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.3e-11 72.0 82 51.2
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 2.9e-11 71.6 74 56.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.9e-11 71.2 82 51.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.9e-11 71.2 78 52.6
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.0e-11 70.9 82 52.4
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 5.0e-11 70.9 72 55.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 5.0e-11 70.9 77 51.9
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 6.6e-11 70.5 77 53.2
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 6.6e-11 70.5 76 55.3
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 8.6e-11 70.1 80 51.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 8.6e-11 70.1 80 51.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.1e-10 69.7 74 55.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-10 69.7 80 51.2
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.1e-10 69.7 75 52.0
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.5e-10 69.3 86 43.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.5e-10 69.3 79 51.9
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 73 54.8
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.3e-10 68.2 102 44.1
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.3e-10 68.2 74 56.8
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.3e-10 67.8 73 56.2
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.6e-09 65.9 80 52.5
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.1e-09 65.5 72 50.0
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.8e-09 65.1 59 61.0
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.6e-09 64.7 86 47.7
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.6e-09 64.7 69 52.2
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.6e-09 64.7 75 52.0
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.6e-09 64.7 85 47.1
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.7e-09 64.3 77 49.4
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 8.0e-09 63.5 75 50.7
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.0e-09 63.5 73 53.4
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 48.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-08 62.8 75 48.0
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.8e-08 62.4 76 48.7
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.3e-08 62.0 76 51.3
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.3e-08 62.0 80 48.8
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 2.3e-08 62.0 76 51.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.3e-08 62.0 75 48.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 2.3e-08 62.0 76 48.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.1e-08 61.6 71 50.7
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 3.1e-08 61.6 90 44.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 4.0e-08 61.2 77 49.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.2e-08 60.8 79 49.4
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.8e-08 60.5 83 45.8
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 6.8e-08 60.5 79 49.4
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 1.2e-07 59.7 82 45.1
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.6e-07 58.5 91 42.9
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.4e-07 57.8 71 47.9
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.8e-07 57.4 78 47.4
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 5.8e-07 57.4 90 41.1
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.8e-07 57.4 86 45.3
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 7.5e-07 57.0 84 44.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.8e-07 56.6 74 45.9
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.3e-06 56.2 69 47.8
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.7e-06 55.8 96 40.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 6.4e-06 53.9 84 41.7
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.4e-06 53.9 61 50.8


User provided reference genes

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