Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G6690 Aethionema arabicum HOM05D001316 ORTHO05D001113 2.3e-38 161.8 84 100.0
AL7G29960 Arabidopsis lyrata HOM05D001316 ORTHO05D001113 2.1e-15 85.5 81 65.4
THA.LOC104814684 Tarenaya hassleriana HOM05D001316 ORTHO05D001113 2.8e-15 85.1 79 59.5
BcaC01g00816 Brassica carinata HOM05D001316 ORTHO05D001113 3.6e-15 84.7 80 63.8
C03p84690 Brassica napus HOM05D001316 ORTHO05D001113 3.6e-15 84.7 80 63.8
BolC3t20756H Brassica oleracea HOM05D001316 ORTHO05D001113 3.6e-15 84.7 80 63.8
BcaNung01051 Brassica carinata HOM05D001316 ORTHO05D001113 8.1e-15 83.6 79 63.3
A08p16160 Brassica napus HOM05D001316 ORTHO05D001113 8.1e-15 83.6 80 62.5
AT4G23496 Arabidopsis thaliana HOM05D001316 ORTHO05D001113 1.8e-14 82.4 80 63.8
BcaB03g11763 Brassica carinata HOM05D001316 ORTHO05D001113 3.1e-14 81.6 81 59.3
BraA08t33586Z Brassica rapa HOM05D001316 ORTHO05D001113 3.1e-14 81.6 80 61.2
Sp7g21390 Schrenkiella parvula HOM05D001316 ORTHO05D001113 6.8e-14 80.5 80 61.2
Thhalv10027042m.g Eutrema salsugineum HOM05D001316 ORTHO05D001113 8.9e-14 80.1 80 61.2
BraA01t01412Z Brassica rapa HOM05D001316 ORTHO05D001113 1.2e-13 79.7 79 60.8
CARHR230830 Cardamine hirsuta HOM05D001316 ORTHO05D001113 1.2e-13 79.7 80 58.8
Carub.0007s1769 Capsella rubella HOM05D001316 ORTHO05D001113 2.6e-13 78.6 81 63.0
BcaC09g50991 Brassica carinata HOM05D001316 ORTHO05D001113 7.6e-13 77.0 79 59.5
C01p18230 Brassica napus HOM05D001316 ORTHO05D001113 7.6e-13 77.0 79 59.5
BolC1t01749H Brassica oleracea HOM05D001316 ORTHO05D001113 7.6e-13 77.0 79 59.5
A01p14730 Brassica napus HOM05D001316 ORTHO05D001113 9.9e-13 76.6 79 59.5
THA.LOC104806421 Tarenaya hassleriana HOM05D001316 ORTHO05D001113 4.1e-11 71.2 79 51.9
Potri.001G100100 Populus trichocarpa HOM05D001316 ORTHO05D001113 2.7e-10 68.6 79 55.7
RcHm_v2.0_Chr7g0196801 Rosa chinensis HOM05D001316 ORTHO05D001113 3.5e-10 68.2 79 53.2
EL10Ac5g12822 Beta vulgaris HOM05D001316 ORTHO05D001113 7.8e-10 67.0 80 53.8
Ciclev10023365m.g Citrus clementina HOM05D001316 ORTHO05D001113 1.0e-09 66.6 79 53.2
AUR62010731 Chenopodium quinoa HOM05D001316 ORTHO05D001113 1.3e-09 66.2 80 53.8
AUR62019740 Chenopodium quinoa HOM05D001316 ORTHO05D001113 1.3e-09 66.2 80 53.8
Potri.003G131600 Populus trichocarpa HOM05D001316 ORTHO05D001113 1.3e-09 66.2 79 57.0
Sabra01G0075100 Salix brachista HOM05D001316 ORTHO05D001113 1.3e-09 66.2 79 53.2
Cfa012189 Carpinus fangiana HOM05D001316 ORTHO05D001113 2.3e-09 65.5 79 54.4
MD06G1158500 Malus domestica HOM05D001316 ORTHO05D001113 2.3e-09 65.5 88 50.0
Manes.02G018200 Manihot esculenta HOM05D001316 ORTHO05D001113 2.3e-09 65.5 79 54.4
Sabra03G0094000 Salix brachista HOM05D001316 ORTHO05D001113 2.3e-09 65.5 79 55.7
PGR031G1080 Punica granatum HOM05D001316 ORTHO05D001113 3.0e-09 65.1 86 53.5
Hund26040 Selenicereus undatus HOM05D001316 ORTHO05D001113 3.0e-09 65.1 82 45.1
Haze_08829 Corylus avellana HOM05D001316 ORTHO05D001113 5.1e-09 64.3 79 54.4
Gorai.004G139000 Gossypium raimondii HOM05D001316 ORTHO05D001113 6.6e-09 63.9 85 49.4
Rhsim02G0234800 Rhododendron simsii HOM05D001316 ORTHO05D001113 6.6e-09 63.9 85 51.8
TWI15G0013 Tripterygium wilfordii HOM05D001316 ORTHO05D001113 6.6e-09 63.9 80 52.5
FAN13G2819 Fragaria x ananassa HOM05D001316 ORTHO05D001113 8.7e-09 63.5 79 51.9
Hma1.2p1_0216F.1_g090970 Hydrangea macrophylla HOM05D001316 ORTHO05D001113 8.7e-09 63.5 81 50.6
Prupe.5G105200 Prunus persica HOM05D001316 ORTHO05D001113 8.7e-09 63.5 83 48.2
FAN04G1683 Fragaria x ananassa HOM05D001316 ORTHO05D001113 1.1e-08 63.2 79 50.6
FAN08G1705 Fragaria x ananassa HOM05D001316 ORTHO05D001113 1.1e-08 63.2 79 50.6
MSTRG.13857 Avicennia marina HOM05D001316 ORTHO05D001113 1.5e-08 62.8 79 48.1
FvH4_5g03030 Fragaria vesca HOM05D001316 ORTHO05D001113 1.5e-08 62.8 80 53.8
FAN18G1802 Fragaria x ananassa HOM05D001316 ORTHO05D001113 1.5e-08 62.8 80 53.8
CSS0005737 Camellia sinensis var. sinensis HOM05D001316 ORTHO05D001113 2.5e-08 62.0 79 51.9
CiPaw.11G131100 Carya illinoinensis HOM05D001316 ORTHO05D001113 2.5e-08 62.0 80 51.2
Duzib068G0152 Durio zibethinus HOM05D001316 ORTHO05D001113 2.5e-08 62.0 85 51.8
vmacro11401 Vaccinium macrocarpon HOM05D001316 ORTHO05D001113 2.5e-08 62.0 85 51.8
Dinv37607 Davidia involucrata HOM05D001316 ORTHO05D001113 3.3e-08 61.6 85 51.8
Eucgr.D01822 Eucalyptus grandis HOM05D001316 ORTHO05D001113 3.3e-08 61.6 94 45.7
MBI04_g39323_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.3e-08 61.6 79 49.4
GSVIVG01019404001 Vitis vinifera HOM05D001316 ORTHO05D001113 3.3e-08 61.6 81 51.9
Duzib205G1298 Durio zibethinus HOM05D001316 ORTHO05D001113 4.3e-08 61.2 82 51.2
Hma1.2p1_0216F.1_g090950 Hydrangea macrophylla HOM05D001316 ORTHO05D001113 4.3e-08 61.2 80 50.0
MD06G1089300 Malus domestica HOM05D001316 ORTHO05D001113 4.3e-08 61.2 85 50.6
Thecc.03G285000 Theobroma cacao HOM05D001316 ORTHO05D001113 4.3e-08 61.2 82 50.0
Gohir.D08G135800 Gossypium hirsutum HOM05D001316 ORTHO05D001113 5.6e-08 60.8 85 48.2
QL12p032007 Quercus lobata HOM05D001316 ORTHO05D001113 7.3e-08 60.5 91 45.1
MD14G1110000 Malus domestica HOM05D001316 ORTHO05D001113 9.6e-08 60.1 83 49.4
TAR375G1106 Trochodendron aralioides HOM05D001316 ORTHO05D001113 9.6e-08 60.1 79 51.9
Ah.12g051840 Amaranthus hybridus HOM05D001316 ORTHO05D001113 1.6e-07 59.3 89 47.2
Hund11442 Selenicereus undatus HOM05D001316 ORTHO05D001113 1.6e-07 59.3 83 48.2
Manes.01G058200 Manihot esculenta HOM05D001316 ORTHO05D001113 2.1e-07 58.9 79 53.2
Duzib084G0684 Durio zibethinus HOM05D001316 ORTHO05D001113 2.8e-07 58.5 82 48.8
COL.COLO4_08376 Corchorus olitorius HOM05D001316 ORTHO05D001113 6.2e-07 57.4 86 48.8
Glyma.11G021900 Glycine max HOM05D001316 ORTHO05D001113 8.1e-07 57.0 79 49.4
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 8.1e-07 57.0 80 47.5
Oeu031425.1 Olea europaea HOM05D001316 ORTHO05D001113 1.1e-06 56.6 78 47.4
Cpa.g.sc180.27 Carica papaya HOM05D001316 ORTHO05D001113 1.4e-06 56.2 82 51.2
ATR0661G087 Amborella trichopoda HOM05D001316 ORTHO05D001113 1.8e-06 55.8 80 48.8
Dinv28387 Davidia involucrata HOM05D001316 ORTHO05D001113 1.8e-06 55.8 84 52.4
Aqoxy5G04094 Aquilegia oxysepala HOM05D001316 ORTHO05D001113 2.4e-06 55.5 82 47.6
Manes.06G152300 Manihot esculenta HOM05D001316 ORTHO05D001113 4.0e-06 54.7 82 48.8
Oeu049857.1 Olea europaea HOM05D001316 ORTHO05D001113 4.0e-06 54.7 79 44.3
Pp3c18_18290 Physcomitrium patens HOM05D001316 ORTHO05D001113 4.0e-06 54.7 99 45.5
Pp3c18_18370 Physcomitrium patens HOM05D001316 ORTHO05D001113 4.0e-06 54.7 99 45.5
Gohir.A12G234000 Gossypium hirsutum HOM05D001316 ORTHO05D001113 5.2e-06 54.3 82 47.6
Prupe.5G105300 Prunus persica HOM05D001316 ORTHO05D001113 5.2e-06 54.3 84 47.6
Sc01g0009760 Simmondsia chinensis HOM05D001316 ORTHO05D001113 5.2e-06 54.3 87 43.7
Gohir.D12G233300 Gossypium hirsutum HOM05D001316 ORTHO05D001113 6.9e-06 53.9 82 47.6
Gorai.008G249700 Gossypium raimondii HOM05D001316 ORTHO05D001113 6.9e-06 53.9 82 47.6
LjContig00312_ERROPOS870357g0001511 Lotus japonicus HOM05D001316 ORTHO05D001113 6.9e-06 53.9 79 46.8
Zm00001eb393120 Zea mays HOM05D001316 ORTHO05D001113 6.9e-06 53.9 79 46.8
Zm00001eb409450 Zea mays HOM05D001316 ORTHO05D001113 6.9e-06 53.9 79 44.3
CiPaw.12G090200 Carya illinoinensis HOM05D001316 ORTHO05D001113 9.0e-06 53.5 91 45.1
Migut.A00752 Erythranthe guttata HOM05D001316 ORTHO05D001113 9.0e-06 53.5 91 42.9


User provided reference genes

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