Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 8.2e-258 893.3 467 100.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 2.7e-216 755.4 470 84.9
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.8e-215 751.5 467 84.8
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 6.5e-215 750.7 465 83.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.1e-214 750.0 470 84.0
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.4e-211 738.0 461 83.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.8e-210 735.3 461 83.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.8e-210 735.3 463 84.0
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.7e-208 728.8 461 83.1
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.7e-208 728.8 461 83.1
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 5.9e-208 727.6 462 83.1
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 3.4e-195 685.3 431 84.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.5e-187 659.8 432 81.5
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.3e-167 592.8 415 74.2
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 6.2e-157 558.1 472 62.5
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 9.6e-150 534.3 469 61.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 8.1e-149 531.2 469 60.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.2e-147 527.3 467 60.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-146 523.9 468 58.8
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.7e-146 523.5 467 60.4
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 2.9e-146 522.7 464 59.9
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 7.1e-145 518.1 463 59.0
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 9.3e-145 517.7 465 59.4
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.9e-143 512.3 467 58.7
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 3.9e-143 512.3 464 59.5
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 6.7e-143 511.5 469 59.1
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.5e-142 510.4 474 59.7
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.3e-142 508.8 464 59.3
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.8e-141 506.1 476 56.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 4.8e-141 505.4 463 60.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.2e-141 504.6 470 55.7
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.4e-140 503.8 470 55.5
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.4e-140 503.1 463 56.8
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 4.1e-140 502.3 466 57.7
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 5.3e-140 501.9 469 57.6
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 9.0e-140 501.1 468 55.8
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.2e-139 500.7 462 57.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.5e-139 500.4 470 55.3
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.6e-139 499.6 462 58.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.5e-139 498.8 469 56.3
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 3.8e-138 495.7 462 56.3
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 6.5e-138 495.0 456 59.0
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 8.4e-138 494.6 468 55.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.1e-137 494.2 464 56.9
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.5e-136 489.2 470 56.6
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 6.1e-136 488.4 467 55.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.3e-135 486.5 470 56.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.3e-135 486.5 465 56.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.5e-134 483.0 466 56.9
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.8e-133 479.6 464 56.2
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 8.2e-133 478.0 467 57.2
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.1e-132 476.1 461 54.9
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.6e-131 473.0 473 52.9
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.3e-130 470.7 464 53.2
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.7e-130 470.3 469 55.7
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.2e-130 469.9 469 55.2
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.9e-130 469.5 454 56.8
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 4.2e-129 465.7 463 55.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 4.6e-128 462.2 409 59.4
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 7.9e-128 461.5 427 58.8
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 7.4e-126 454.9 470 54.0
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 7.4e-126 454.9 465 51.6
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.7e-125 453.8 468 51.1
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.8e-125 453.0 468 51.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.1e-124 449.1 429 58.0
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 7.7e-123 444.9 473 54.8
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 7.7e-123 444.9 464 53.0
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.0e-122 444.5 467 53.3
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.0e-122 444.5 396 61.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 5.5e-121 438.7 387 59.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 8.8e-119 431.4 373 58.7
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.4e-118 429.1 376 60.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 9.7e-118 427.9 462 51.9
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 8.2e-117 424.9 469 52.0
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.1e-116 422.9 549 44.3
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.6e-115 419.9 464 49.1
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.7e-112 409.1 504 49.0
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.5e-110 404.1 386 53.1
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 2.6e-110 403.3 470 48.7
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 3.3e-110 402.9 387 57.4
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.4e-108 397.5 424 50.0
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.4e-108 396.7 525 46.5
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.7e-107 391.7 464 49.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.5e-105 387.5 477 45.9
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.6e-104 384.0 481 47.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.2e-102 377.9 509 48.1
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.6e-102 376.7 411 49.4
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.8e-101 372.5 494 44.5
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 8.3e-101 371.7 369 53.1
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.2e-99 367.9 429 50.1
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 3.8e-98 362.8 442 48.2
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 8.0e-96 355.1 322 57.1
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.3e-95 353.6 290 61.7
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.3e-93 347.8 362 53.3
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 6.3e-93 345.5 465 45.8
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 5.4e-92 342.4 410 48.0
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.0e-90 338.2 351 52.1
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.6e-89 332.4 320 57.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-88 330.9 373 49.6
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.0e-87 326.6 291 56.0
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 8.9e-87 325.1 295 56.3
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 9.8e-86 321.6 349 50.1
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.9e-85 320.1 169 94.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.2e-84 316.6 474 41.6
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 8.6e-82 308.5 276 56.5
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.6e-78 297.0 443 41.8
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.8e-78 295.0 263 55.5
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.7e-72 276.2 254 53.9
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.2e-70 271.6 379 44.9
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 9.8e-70 268.5 316 51.3
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.7e-67 260.4 514 37.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.7e-67 260.4 223 60.1
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.8e-67 258.8 309 50.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.4e-63 248.1 264 50.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 7.1e-60 235.7 303 43.9
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.9e-44 184.5 206 52.9
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 4.6e-43 179.9 177 55.9
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 7.4e-41 172.6 561 29.1
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 9.6e-41 172.2 435 32.4
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.3e-34 151.8 159 49.1
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.6e-32 144.8 553 28.0
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.2e-32 142.9 106 63.2
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-30 138.7 147 49.0
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.9e-29 133.3 164 48.2
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 6.5e-29 132.9 373 29.8
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.2e-21 107.8 116 54.3
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 2.9e-21 107.5 147 46.9
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.2e-20 103.6 151 42.4
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.1e-19 101.3 63 79.4
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.0e-18 97.4 106 53.8
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 4.3e-17 93.6 83 59.0
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.2e-16 89.4 75 58.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.2e-16 89.4 75 58.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.8e-15 88.2 75 57.3
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-14 85.1 75 57.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.7e-13 81.6 54 72.2
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 8.5e-13 79.3 127 35.4
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.2e-11 75.5 125 36.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-11 75.5 81 53.1
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.9e-10 70.5 61 54.1
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 4.3e-09 67.0 85 41.2
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 4.3e-09 67.0 78 50.0
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 2.0e-06 58.2 46 56.5
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 7.7e-06 56.2 32 78.1


User provided reference genes

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