Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 7.4e-85 318.2 250 100.0
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 4.9e-81 305.4 250 96.8
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.4e-80 303.9 250 96.4
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.9e-80 303.5 249 97.2
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 2.5e-80 303.1 249 96.8
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 4.2e-80 302.4 250 95.6
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 4.2e-80 302.4 250 95.6
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 4.2e-80 302.4 250 95.6
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 4.2e-80 302.4 250 95.6
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 4.2e-80 302.4 250 95.6
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.2e-79 300.8 250 95.6
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 5.7e-77 292.0 250 94.0
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.3e-76 290.8 250 92.8
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.3e-73 280.8 250 89.2
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.2e-73 280.0 142 93.7
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.2e-73 280.0 142 93.7
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 2.2e-73 280.0 142 93.7
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 5.0e-73 278.9 142 93.0
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 8.5e-73 278.1 142 93.0
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-72 277.7 142 92.3
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 2.5e-72 276.6 250 88.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.6e-71 273.9 142 90.8
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.3e-70 270.0 250 86.4
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.5e-69 266.5 252 87.7
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 5.7e-69 265.4 248 87.5
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 9.7e-69 264.6 250 87.6
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.7e-68 263.8 248 87.1
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.7e-68 263.8 248 87.1
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.7e-68 263.8 259 85.3
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 4.8e-68 262.3 253 85.4
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 6.3e-68 261.9 257 85.2
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 8.2e-68 261.5 252 86.1
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.1e-67 261.2 249 87.1
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 1.8e-67 260.4 252 85.3
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.8e-67 260.4 251 85.3
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 2.4e-67 260.0 252 86.1
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 5.3e-67 258.8 251 86.5
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 5.3e-67 258.8 251 86.5
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.3e-67 258.8 252 85.3
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 5.3e-67 258.8 251 85.3
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.9e-67 258.5 252 84.9
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.9e-67 258.5 252 84.9
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.9e-67 258.5 252 84.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.5e-66 257.3 250 84.0
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.5e-66 257.3 252 83.7
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.6e-66 256.5 252 84.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.6e-66 256.5 257 83.3
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 3.4e-66 256.1 142 82.4
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 3.4e-66 256.1 251 84.9
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 5.9e-66 255.4 142 81.7
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.3e-65 254.2 248 83.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 1.3e-65 254.2 249 85.5
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.7e-65 253.8 142 80.3
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 6.5e-65 251.9 248 83.9
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 8.5e-65 251.5 250 84.8
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 8.5e-65 251.5 251 84.1
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 8.5e-65 251.5 250 84.8
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 8.5e-65 251.5 142 79.6
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 8.5e-65 251.5 142 80.3
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 84.7
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.9e-64 250.4 142 78.9
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.9e-64 250.4 252 84.1
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.9e-64 250.4 243 86.8
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 7.2e-64 248.4 248 83.5
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 9.4e-64 248.1 248 83.9
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 9.4e-64 248.1 251 84.1
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 9.4e-64 248.1 248 84.3
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.2e-63 247.7 243 86.4
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.2e-63 247.7 248 83.9
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 2.1e-63 246.9 246 84.6
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.7e-63 246.5 252 81.7
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 6.1e-63 245.4 248 83.5
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 6.1e-63 245.4 248 83.5
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 6.1e-63 245.4 248 83.5
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.4e-62 244.2 241 84.6
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.4e-62 244.2 243 84.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-62 243.8 248 82.3
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 2.3e-62 243.4 248 82.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.3e-62 243.4 248 82.3
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 2.3e-62 243.4 142 78.2
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 3.3e-61 239.6 251 80.9
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 3.3e-61 239.6 248 82.3
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.7e-61 238.8 252 79.8
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.7e-60 237.3 252 79.0
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.7e-60 237.3 252 79.4
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.7e-60 237.3 144 76.4
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 76.2
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 3.7e-60 236.1 142 73.2
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 76.4
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 2.4e-59 233.4 242 83.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 4.1e-59 232.6 142 71.1
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.1e-59 232.6 142 71.8
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.2e-58 231.1 142 71.8
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 1.2e-58 231.1 142 73.2
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.2e-58 231.1 250 79.2
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.5e-58 230.7 142 71.1
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 7.7e-58 228.4 143 72.0
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 72.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 71.1
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 5.0e-57 225.7 142 71.1
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 8.5e-57 224.9 147 72.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-56 224.2 142 70.4
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 5.5e-56 222.2 142 70.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 5.5e-56 222.2 142 70.4
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.5e-53 214.2 142 68.3
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.3e-52 211.1 142 73.9
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.1e-48 198.0 250 78.4
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 4.2e-48 196.1 142 62.0
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 8.8e-46 188.3 144 57.6
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 1.3e-44 184.5 142 59.9
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 2.8e-44 183.3 138 60.1
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.4e-43 180.3 142 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.9e-41 173.3 142 59.9
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.6e-39 167.5 116 67.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 5.2e-38 162.5 211 78.2
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.7e-36 157.5 109 65.1
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.7e-36 156.4 105 69.5
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 9.1e-35 151.8 110 66.4
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.2e-34 151.4 140 52.9
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 3.0e-30 136.7 113 58.4
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.7e-28 131.0 130 46.9
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 6.3e-28 129.0 111 57.7
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 8.6e-17 92.0 143 37.8
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.6e-17 92.0 142 39.4
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.8e-15 87.0 142 39.4
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.3e-12 78.2 140 80.0
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 4.1e-11 73.2 111 40.5
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.1e-10 70.9 119 38.7
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.2e-07 61.6 35 68.6
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 1.4e-06 58.2 35 65.7
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 4.0e-06 56.6 102 34.3
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 8.9e-06 55.5 85 38.8


User provided reference genes

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