Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 8.4e-168 593.6 293 100.0
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.4e-130 469.2 295 81.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 5.3e-130 468.0 296 81.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 5.3e-130 468.0 297 81.1
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 6.9e-130 467.6 296 81.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 3.2e-127 458.8 294 78.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.2e-127 458.8 294 78.2
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.2e-127 458.8 294 78.2
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 4.2e-127 458.4 294 78.6
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.6e-126 456.4 294 78.2
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.6e-126 456.4 294 78.2
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.5e-121 439.9 293 75.1
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.1e-114 415.6 267 76.8
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.0e-113 412.9 275 73.8
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 4.5e-113 411.8 271 73.4
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.3e-112 410.2 272 75.0
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 2.9e-112 409.1 291 70.4
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 3.8e-112 408.7 290 71.4
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.5e-111 406.0 291 70.4
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 8.0e-110 401.0 272 72.8
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.0e-109 399.1 265 74.7
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 6.7e-109 397.9 268 73.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-108 396.4 269 72.5
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.3e-108 395.6 268 72.8
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-108 395.2 269 72.5
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 7.5e-108 394.4 267 73.8
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 9.7e-108 394.0 268 72.8
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 9.7e-108 394.0 290 67.9
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.3e-107 393.7 272 71.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.8e-107 391.7 268 72.4
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.8e-107 391.7 266 71.8
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.1e-106 390.6 259 74.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.4e-106 389.4 289 68.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.3e-106 388.3 268 70.1
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 7.0e-106 387.9 261 73.2
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 7.0e-106 387.9 285 69.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 9.1e-106 387.5 295 67.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 9.1e-106 387.5 254 73.6
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.6e-105 386.7 273 70.0
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.6e-105 386.7 272 69.9
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.6e-105 386.7 286 67.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.0e-105 386.3 270 70.4
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.0e-105 386.3 291 66.7
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.0e-105 386.3 272 69.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.9e-105 384.8 291 66.0
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.0e-104 384.0 291 66.0
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.3e-104 383.6 292 64.4
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.7e-104 383.3 270 70.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.8e-104 382.1 261 72.4
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.8e-104 382.1 263 71.9
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 6.5e-104 381.3 266 69.2
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.5e-103 380.2 266 69.2
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.9e-103 379.8 269 71.0
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.9e-103 379.8 273 68.1
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 4.2e-103 378.6 293 67.2
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 7.2e-103 377.9 290 67.2
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.0e-101 374.0 318 62.6
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 8.8e-101 370.9 272 68.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.0e-100 369.8 259 70.7
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.0e-100 369.8 285 64.6
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.6e-100 369.4 263 69.2
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 4.4e-100 368.6 265 67.9
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 5.7e-100 368.2 291 66.0
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 9.8e-100 367.5 263 70.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.8e-99 365.9 292 63.0
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-98 363.6 298 64.1
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.8e-98 363.2 270 66.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.2e-97 360.5 262 67.6
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.6e-97 360.1 285 64.6
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.6e-97 360.1 285 64.6
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.7e-97 359.4 266 67.3
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 3.5e-97 359.0 290 63.1
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.7e-96 356.7 289 63.0
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.3e-96 356.3 287 63.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 6.6e-96 354.8 288 62.8
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 4.2e-95 352.1 287 61.7
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.2e-94 350.5 286 62.2
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.2e-94 350.5 210 83.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.2e-94 350.5 289 61.9
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.6e-94 350.1 266 65.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.6e-94 349.0 211 82.5
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.0e-93 347.4 284 62.3
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.8e-93 346.7 265 65.3
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 3.0e-93 345.9 285 62.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 8.9e-93 344.4 264 65.2
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.5e-92 343.6 270 63.3
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 8.3e-91 337.8 251 65.3
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.1e-90 335.9 227 72.7
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 3.2e-82 309.3 266 59.8
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.6e-81 307.0 289 56.1
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.6e-81 305.4 216 70.8
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 3.0e-80 302.8 293 57.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.3e-79 298.9 268 58.2
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 2.3e-77 293.1 290 54.8
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.7e-75 287.0 293 53.6
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 4.1e-74 282.3 292 52.1
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.6e-73 280.4 270 55.2
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.1e-73 280.0 317 52.7
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.1e-73 280.0 287 54.0
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.7e-73 279.6 266 54.1
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.0e-73 278.5 295 54.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 6.0e-73 278.5 273 52.7
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 2.3e-72 276.6 251 58.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.5e-71 273.9 295 51.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 9.5e-71 271.2 291 51.9
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.9e-67 258.8 284 50.7
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.7e-65 253.1 259 53.7
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.1e-62 243.4 355 43.1
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.2e-62 241.9 164 70.7
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.2e-59 233.4 190 63.2
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-56 223.8 154 68.8
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.2e-51 206.8 306 42.5
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.4e-51 205.3 255 45.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 7.8e-49 198.4 274 40.9
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 7.6e-44 181.8 239 45.2
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.7e-41 173.3 262 39.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.3e-37 159.1 144 56.9
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.6e-36 156.8 110 69.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-34 151.4 157 54.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-33 147.5 83 80.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 4.0e-29 132.9 86 76.7
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-27 125.6 126 53.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 2.1e-25 120.6 92 67.4
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.5e-25 119.8 96 62.5
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.4e-16 91.3 181 34.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.8e-14 83.6 44 84.1
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-14 83.2 85 55.3
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.2e-12 78.2 38 89.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-11 73.6 37 89.2
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-11 73.6 37 89.2
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 2.3e-08 63.9 68 51.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 6.7e-08 62.4 66 50.0
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-06 56.6 38 68.4


User provided reference genes

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