Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.9e-222 775.0 421 100.0
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.5e-178 629.8 429 83.4
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.9e-177 625.5 432 80.8
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.6e-175 619.8 426 82.6
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 3.9e-174 615.1 436 78.2
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.0e-174 614.8 433 80.8
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 5.2e-171 604.7 441 79.1
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-168 596.7 427 78.7
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 4.6e-167 591.7 423 79.0
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 1.1e-165 587.0 420 78.6
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 1.1e-165 587.0 420 78.6
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 3.6e-164 582.0 428 79.2
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 4.7e-164 581.6 422 78.0
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 8.1e-164 580.9 418 78.0
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 3.8e-161 572.0 426 79.3
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 3.8e-161 572.0 426 79.3
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 4.2e-152 542.0 425 69.9
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.6e-148 530.0 390 77.9
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 8.2e-132 474.6 288 79.9
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.4e-131 473.8 286 81.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 5.3e-131 471.9 286 81.5
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 6.9e-131 471.5 285 81.1
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.2e-130 470.7 286 80.8
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.6e-130 469.5 284 80.6
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 3.4e-130 469.2 286 80.8
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 5.8e-130 468.4 282 80.9
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 2.2e-129 466.5 287 79.4
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 2.9e-129 466.1 286 80.1
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 6.5e-129 464.9 279 81.4
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 3.2e-128 462.6 286 79.0
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 4.2e-128 462.2 284 79.9
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 4.2e-128 462.2 279 79.9
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 7.1e-128 461.5 283 79.9
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 9.3e-128 461.1 282 79.8
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 2.7e-127 459.5 336 71.4
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 2.7e-127 459.5 279 80.3
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 2.7e-127 459.5 301 76.1
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.7e-127 459.5 406 63.1
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 3.5e-127 459.1 283 79.9
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 4.6e-127 458.8 353 67.7
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 6.0e-127 458.4 284 78.9
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 6.0e-127 458.4 277 79.8
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 6.0e-127 458.4 282 79.4
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 7.9e-127 458.0 284 78.5
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.0e-126 457.6 415 61.0
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 3.9e-126 455.7 280 80.0
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 5.1e-126 455.3 392 62.8
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 6.7e-126 454.9 376 66.2
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 6.7e-126 454.9 376 66.2
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 6.7e-126 454.9 419 60.6
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 6.7e-126 454.9 277 80.5
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 1.1e-125 454.1 276 80.1
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.1e-125 454.1 282 78.7
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.5e-125 453.8 330 70.0
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 4.3e-125 452.2 279 78.9
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 5.7e-125 451.8 276 79.0
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 7.4e-125 451.4 279 78.9
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 7.4e-125 451.4 366 65.6
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 7.4e-125 451.4 330 70.6
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 9.7e-125 451.1 398 62.1
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.6e-124 450.3 277 78.3
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.6e-124 450.3 353 66.6
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.6e-124 450.3 286 78.0
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 2.2e-124 449.9 279 78.5
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 2.8e-124 449.5 372 64.0
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 3.7e-124 449.1 352 67.0
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 3.7e-124 449.1 399 62.9
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 6.3e-124 448.4 286 78.0
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.4e-123 447.2 424 59.7
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.8e-123 446.8 421 60.1
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.8e-123 446.8 346 67.6
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 2.4e-123 446.4 282 77.3
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 3.1e-123 446.0 392 62.5
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.1e-123 446.0 279 77.4
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 3.1e-123 446.0 353 66.3
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 5.3e-123 445.3 416 60.6
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 5.3e-123 445.3 416 60.6
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 1.5e-122 443.7 415 60.2
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.5e-122 443.7 423 59.8
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.5e-122 443.7 311 71.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 2.6e-122 443.0 365 64.9
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-121 440.7 418 59.6
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.3e-121 440.7 392 62.5
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.3e-121 440.7 285 75.1
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 1.7e-121 440.3 418 59.1
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 2.2e-121 439.9 418 59.8
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-121 439.9 418 60.5
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.2e-121 439.9 415 59.3
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 2.2e-121 439.9 387 63.8
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 2.9e-121 439.5 350 64.9
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.9e-121 439.5 348 65.5
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.9e-121 439.5 350 64.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 6.5e-121 438.3 418 59.6
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 8.5e-121 438.0 418 58.9
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 8.5e-121 438.0 415 59.0
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 8.5e-121 438.0 291 72.5
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 1.1e-120 437.6 418 60.3
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.1e-120 437.6 419 58.7
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 1.4e-120 437.2 419 58.5
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.4e-120 437.2 426 59.4
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 2.5e-120 436.4 382 63.6
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 3.2e-120 436.0 283 74.6
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 5.5e-120 435.3 281 73.0
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 9.3e-120 434.5 418 58.4
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.6e-119 433.7 286 73.8
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 2.1e-119 433.3 385 63.6
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 2.7e-119 433.0 283 74.2
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.4e-118 430.6 419 58.2
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 1.8e-118 430.3 282 74.8
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 5.1e-118 428.7 364 62.6
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 6.7e-118 428.3 398 59.8
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.9e-117 426.8 396 59.3
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 5.7e-117 425.2 285 75.1
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.7e-116 423.7 284 74.3
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 2.2e-116 423.3 277 75.1
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 4.8e-116 422.2 341 63.3
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.2e-114 417.5 334 66.8
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 2.2e-113 413.3 337 62.9
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.1e-111 406.8 418 56.2
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 9.1e-107 391.3 238 81.5
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 2.0e-106 390.2 390 58.2
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.6e-106 389.8 466 53.2
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 2.2e-105 386.7 351 62.1
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 7.4e-101 371.7 283 64.3
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 8.2e-100 368.2 262 71.4
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 4.1e-99 365.9 211 83.4
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.2e-96 355.9 236 89.4
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 3.3e-93 346.3 295 63.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 7.2e-88 328.6 206 80.6
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.0e-86 324.7 190 84.7
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 3.7e-84 316.2 243 68.7
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 5.9e-82 308.9 270 55.9
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 3.8e-81 306.2 402 46.0
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.1e-80 304.7 273 54.9
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 7.0e-75 285.4 223 66.4
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.3e-72 276.2 250 60.8
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.2e-71 274.6 250 60.8
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.3e-68 264.6 174 91.4
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 8.3e-68 261.9 208 68.3
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.4e-67 261.2 255 49.4
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.1e-59 235.0 181 66.3
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-58 231.5 174 64.9
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 2.1e-58 230.7 164 72.0
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.1e-58 230.7 174 66.1
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 5.1e-57 226.1 174 64.4
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-54 218.4 130 77.7
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 2.6e-53 213.8 162 69.1
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-38 164.1 174 50.6
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-38 163.3 148 57.4
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-38 163.3 111 68.5
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 2.2e-36 157.5 157 50.3
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-34 150.6 131 60.3
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 7.6e-29 132.5 72 81.9
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.2e-28 131.0 72 80.6
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 1.4e-27 128.3 75 78.7
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 2.7e-26 124.0 114 49.1
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 8.7e-25 119.0 97 59.8
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-24 117.5 62 82.3
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 4.5e-21 106.7 100 52.0
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 7.1e-19 99.4 53 88.7
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.6e-18 98.2 104 51.9
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 1.0e-17 95.5 141 39.7
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 9.6e-16 89.0 57 73.7
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 2.1e-15 87.8 91 57.1
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 6.2e-15 86.3 59 66.1
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.5e-13 81.6 55 72.7
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 3.4e-13 80.5 53 71.7
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 2.4e-06 57.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 2.4e-06 57.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 2.4e-06 57.8 28 92.9
Aa31sc425G10 Aethionema arabicum HOM05D000223 ORTHO05D059241 9.0e-06 55.8 57 64.9


User provided reference genes

Program Settings