Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 7.9e-27 123.6 94 100.0
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 6.7e-18 94.0 98 63.3
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 7.4e-17 90.5 98 73.5
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 9.7e-17 90.1 99 57.6
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 1.6e-16 89.4 98 55.1
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 1.6e-16 89.4 98 55.1
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 8.2e-16 87.0 98 54.1
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 1.1e-15 86.7 99 54.5
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.4e-15 86.3 100 54.0
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.4e-15 86.3 98 56.1
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 2.4e-15 85.5 98 56.1
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 3.1e-15 85.1 98 77.6
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 5.3e-15 84.3 99 64.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 1.4e-12 76.3 94 51.1
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 1.9e-12 75.9 99 50.5
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 2.1e-11 72.4 93 51.6
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 2.1e-11 72.4 93 51.6
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 6.1e-11 70.9 93 50.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.5e-09 66.2 53 69.8
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 4.3e-09 64.7 39 82.1
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 45 66.7
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 2.2e-08 62.4 53 66.0
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.8e-08 61.2 45 66.7
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 6.3e-08 60.8 45 64.4
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 6.3e-08 60.8 45 64.4
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 6.3e-08 60.8 45 64.4
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 6.3e-08 60.8 40 75.0
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 6.3e-08 60.8 40 72.5
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.1e-07 60.1 39 71.8
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 1.1e-07 60.1 50 68.0
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-07 60.1 50 68.0
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-07 60.1 50 68.0
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-07 60.1 50 68.0
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 45 64.4
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 45 64.4
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.4e-07 59.7 51 62.7
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.4e-07 59.7 51 62.7
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.4e-07 59.7 45 64.4
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.4e-07 59.7 39 74.4
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.8e-07 59.3 45 66.7
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 1.8e-07 59.3 39 74.4
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 1.8e-07 59.3 40 65.0
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.4e-07 58.9 45 66.7
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 2.4e-07 58.9 39 69.2
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 2.4e-07 58.9 39 69.2
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.4e-07 58.9 40 67.5
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 3.1e-07 58.5 39 71.8
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 3.1e-07 58.5 39 69.2
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 3.1e-07 58.5 39 71.8
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 3.1e-07 58.5 40 67.5
BcaNung04703 Brassica carinata HOM05D012071 ORTHO05D013970 4.1e-07 58.2 97 61.9
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 4.1e-07 58.2 45 62.2
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 4.1e-07 58.2 39 69.2
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 4.1e-07 58.2 43 67.4
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 5.3e-07 57.8 39 74.4
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.3e-07 57.8 50 66.0
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.3e-07 57.8 50 66.0
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 5.3e-07 57.8 39 71.8
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 6.9e-07 57.4 45 66.7
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 6.9e-07 57.4 39 69.2
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 6.9e-07 57.4 46 60.9
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 6.9e-07 57.4 39 71.8
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 9.1e-07 57.0 40 67.5
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 9.1e-07 57.0 46 65.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 9.1e-07 57.0 40 70.0
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 9.1e-07 57.0 46 56.5
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 9.1e-07 57.0 46 56.5
Thhalv10026664m.g Eutrema salsugineum HOM05D012071 ORTHO05D013970 1.2e-06 56.6 96 63.5
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.2e-06 56.6 39 69.2
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.2e-06 56.6 40 62.5
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.2e-06 56.6 40 65.0
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.2e-06 56.6 40 65.0
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.5e-06 56.2 46 65.2
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 66.7
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 66.7
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 66.7
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 66.7
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 66.7
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 64.1
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.5e-06 56.2 40 62.5
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 1.5e-06 56.2 39 69.2
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 2.0e-06 55.8 40 62.5
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 2.0e-06 55.8 47 63.8
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 2.0e-06 55.8 43 65.1
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 2.6e-06 55.5 49 59.2
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 2.6e-06 55.5 48 60.4
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.6e-06 55.5 39 66.7
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 3.4e-06 55.1 39 64.1
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 3.4e-06 55.1 39 66.7
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.4e-06 55.1 39 71.8
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.4e-06 55.1 37 75.7
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.4e-06 55.1 39 71.8
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.4e-06 55.1 37 75.7
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.4e-06 55.1 39 71.8
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.4e-06 55.1 37 75.7
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 4.5e-06 54.7 39 64.1
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 4.5e-06 54.7 39 66.7
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 4.5e-06 54.7 39 66.7
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 5.9e-06 54.3 40 62.5
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 5.9e-06 54.3 46 60.9
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 5.9e-06 54.3 39 71.8
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 5.9e-06 54.3 50 58.0
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 5.9e-06 54.3 37 70.3
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 5.9e-06 54.3 37 70.3
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 5.9e-06 54.3 39 64.1
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 5.9e-06 54.3 46 54.3
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 7.7e-06 53.9 46 69.6
A01p12410 Brassica napus HOM05D000777 ORTHO05D000595 7.7e-06 53.9 46 69.6
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 7.7e-06 53.9 46 69.6
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 7.7e-06 53.9 46 69.6
BraA01t01187Z Brassica rapa HOM05D000777 ORTHO05D000595 7.7e-06 53.9 46 69.6
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.7e-06 53.9 40 60.0
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 7.7e-06 53.9 39 61.5
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 7.7e-06 53.9 39 61.5
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 7.7e-06 53.9 41 63.4


User provided reference genes

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