Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 2.2e-234 816.2 811 100.0
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 7.5e-134 482.3 820 78.5
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 9.5e-129 465.3 822 78.7
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 2.3e-122 444.1 821 77.8
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 2.8e-120 437.2 821 77.7
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.8e-119 434.5 822 73.7
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 1.1e-113 415.2 825 74.1
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 3.1e-111 407.1 822 75.2
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 6.9e-111 406.0 818 74.4
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 3.4e-102 377.1 823 73.0
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 3.4e-102 377.1 823 73.0
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 5.8e-102 376.3 823 73.0
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 1.6e-96 358.2 820 71.7
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 2.1e-91 341.3 814 69.9
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.4e-71 275.4 214 70.1
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 1.4e-71 275.4 214 70.1
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 1.2e-70 272.3 214 69.6
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 8.8e-66 256.1 695 73.8
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 9.1e-63 246.1 806 61.2
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.3e-61 242.3 691 71.6
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.2e-59 235.7 697 70.4
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 4.7e-59 233.8 694 71.8
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.4e-58 232.3 694 71.6
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 9.7e-57 226.1 175 69.1
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 9.7e-57 226.1 668 72.2
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.2e-56 224.9 414 61.1
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.1e-55 222.6 668 72.0
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.1e-55 222.6 668 71.7
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 3.1e-55 221.1 159 71.1
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 4.1e-55 220.7 303 79.2
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 5.3e-55 220.3 315 74.6
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.2e-54 219.2 696 68.2
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.6e-54 218.8 689 70.5
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 3.5e-54 217.6 312 71.5
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 3.5e-54 217.6 696 69.0
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 3.5e-54 217.6 695 62.4
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 7.7e-54 216.5 308 67.5
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.0e-53 216.1 320 71.6
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 1.0e-53 216.1 688 71.4
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.7e-53 215.3 698 71.3
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.7e-53 215.3 306 63.7
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.7e-53 215.3 315 73.7
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.7e-53 215.3 689 72.1
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.2e-53 214.9 668 71.6
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 2.2e-53 214.9 292 79.1
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 2.9e-53 214.5 150 72.7
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 5.0e-53 213.8 154 64.9
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.5e-52 212.2 313 65.5
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.9e-52 211.8 147 72.1
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 4.2e-52 210.7 158 69.6
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.2e-51 209.1 305 67.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.6e-51 208.8 156 68.6
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.6e-51 208.8 692 67.3
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 2.1e-51 208.4 154 64.3
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.7e-51 207.2 306 67.6
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 6.1e-51 206.8 158 78.5
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 6.1e-51 206.8 320 63.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 6.1e-51 206.8 153 71.9
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 8.0e-51 206.5 314 73.6
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.0e-50 206.1 159 67.9
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.4e-50 205.7 281 71.9
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.8e-50 205.3 280 58.6
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 4.0e-50 204.1 158 67.7
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 6.8e-50 203.4 296 66.6
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 3.4e-49 201.1 158 60.8
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 7.5e-49 199.9 701 54.9
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 9.8e-49 199.5 139 70.5
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 9.8e-49 199.5 319 62.7
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 2.2e-48 198.4 680 69.0
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 4.8e-48 197.2 313 72.5
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 4.8e-48 197.2 310 65.8
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 8.3e-48 196.4 290 76.2
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 8.3e-48 196.4 290 76.2
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 8.3e-48 196.4 309 74.4
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-47 196.1 282 70.6
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.4e-47 195.7 290 75.5
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.4e-47 195.7 708 62.7
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.8e-47 195.3 144 79.9
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.4e-47 194.9 309 64.7
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 9.1e-47 193.0 153 60.8
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 2.0e-46 191.8 300 77.0
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 3.5e-46 191.0 345 64.9
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.5e-46 190.7 689 60.5
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 1.0e-45 189.5 153 65.4
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.1e-44 186.0 679 63.2
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.5e-44 185.7 161 61.5
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 1.5e-44 185.7 309 66.3
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 2.5e-44 184.9 310 65.5
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 9.4e-44 183.0 409 55.3
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.2e-43 182.6 127 71.7
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 1.6e-43 182.2 708 61.6
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 2.1e-43 181.8 636 70.1
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 2.1e-43 181.8 127 70.1
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 3.6e-43 181.0 152 61.8
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 8.0e-43 179.9 154 57.1
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.0e-42 179.5 153 60.8
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 2.3e-42 178.3 281 55.9
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 3.0e-42 177.9 127 70.1
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 4.0e-42 177.6 150 61.3
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.5e-41 175.6 166 53.0
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.5e-41 175.6 133 66.2
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 3.7e-40 171.0 698 63.2
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 1.8e-39 168.7 345 64.9
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.0e-37 162.9 287 72.1
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.0e-37 160.6 161 52.2
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 2.8e-35 154.8 168 51.2
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 3.7e-32 144.4 291 59.5
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 8.3e-32 143.3 112 62.5
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.7e-29 135.6 288 59.0
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 2.3e-29 135.2 115 58.3
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 8.6e-29 133.3 160 44.4
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.1e-27 128.6 316 56.3
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 8.9e-26 123.2 658 52.3
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 5.8e-25 120.6 77 74.0
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 7.5e-25 120.2 77 74.0
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.2e-24 118.6 81 65.4
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 9.2e-23 113.2 80 66.2
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 3.5e-22 111.3 83 62.7
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 6.0e-22 110.5 147 42.9
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.3e-21 108.6 159 44.0
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 8.6e-21 106.7 81 61.7
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 2.8e-19 101.7 110 46.4
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 2.0e-17 95.5 73 61.6
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.9e-15 89.0 82 51.2
HPP92_001621 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.7e-14 85.1 64 62.5
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 7.8e-14 83.6 61 67.2
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.5e-12 79.3 59 64.4
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.1e-11 75.5 49 79.6
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.1e-11 75.5 99 43.4
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 4.4e-09 67.8 53 58.5
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 5.8e-09 67.4 120 31.7
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.1e-07 63.2 40 67.5
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 2.4e-07 62.0 115 27.8
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 5.4e-07 60.8 161 24.8
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 9.2e-07 60.1 137 27.0
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 9.2e-07 60.1 124 31.5
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 9.2e-07 60.1 139 28.1
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 9.2e-07 60.1 140 25.7
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 1.6e-06 59.3 124 29.8
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.6e-06 59.3 104 33.7
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 3.5e-06 58.2 124 32.3
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 3.5e-06 58.2 115 25.2
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 4.6e-06 57.8 98 43.9
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 4.6e-06 57.8 118 29.7
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 6.0e-06 57.4 116 31.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 6.0e-06 57.4 116 32.8
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 7.8e-06 57.0 115 27.0


User provided reference genes

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