Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 1.7e-148 529.3 262 100.0
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 4.7e-61 238.8 259 50.2
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 3.0e-60 236.1 274 48.5
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 3.0e-60 236.1 253 51.0
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 5.2e-60 235.3 277 49.8
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 1.5e-59 233.8 284 45.8
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 4.0e-52 209.1 268 48.1
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 8.9e-52 208.0 243 50.6
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 2.0e-51 206.8 241 51.0
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 3.4e-51 206.1 275 45.8
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 7.5e-51 204.9 256 47.7
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 7.5e-51 204.9 244 50.4
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 2.2e-50 203.4 272 45.6
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 2.8e-50 203.0 270 46.3
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 2.8e-50 203.0 254 47.6
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 4.9e-50 202.2 270 45.9
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 6.3e-50 201.8 288 45.5
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 1.8e-49 200.3 279 44.8
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 1.8e-49 200.3 266 45.9
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 1.8e-49 200.3 279 44.8
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 5.4e-49 198.7 279 44.8
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 5.4e-49 198.7 270 45.6
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 2.7e-48 196.4 273 44.7
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 2.7e-48 196.4 273 44.7
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 3.5e-48 196.1 276 43.8
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.0e-47 194.5 260 45.8
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 1.5e-46 190.7 276 44.2
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 1.5e-46 190.7 276 44.2
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 4.4e-43 179.1 271 41.7
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 3.7e-42 176.0 257 38.9
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.5e-30 137.5 241 36.1
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 1.2e-29 134.4 203 42.4
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 1.2e-27 127.9 244 32.0
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 1.2e-27 127.9 251 33.5
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 4.4e-27 125.9 240 31.2
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.3e-26 124.4 246 30.5
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 2.2e-26 123.6 270 30.7
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 3.7e-26 122.9 256 30.1
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 1.1e-25 121.3 243 32.9
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 1.4e-25 120.9 260 34.6
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 4.1e-25 119.4 246 33.7
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 5.4e-25 119.0 250 34.0
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 9.2e-25 118.2 246 31.7
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 1.6e-24 117.5 257 33.5
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 1.6e-24 117.5 242 31.4
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 2.7e-24 116.7 245 32.7
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 7.8e-24 115.2 241 29.9
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.0e-23 114.8 246 29.7
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 1.0e-23 114.8 255 32.5
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 1.7e-23 114.0 284 28.5
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 1.7e-23 114.0 255 31.4
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 2.3e-23 113.6 256 30.9
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.9e-23 112.8 246 29.7
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 8.6e-23 111.7 253 27.7
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 8.6e-23 111.7 239 30.1
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 3.3e-22 109.8 278 29.5
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 3.3e-22 109.8 250 30.8
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 9.6e-22 108.2 250 29.6
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 9.6e-22 108.2 248 29.8
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 1.2e-21 107.8 245 29.0
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 1.6e-21 107.5 250 29.6
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.8e-21 106.7 246 28.5
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.6e-21 106.3 245 29.0
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 3.6e-21 106.3 245 32.2
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 4.7e-21 105.9 239 29.3
AL6G13530 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 6.2e-21 105.5 155 36.8
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 6.2e-21 105.5 205 30.2
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 8.1e-21 105.1 205 31.2
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.1e-20 104.8 205 30.2
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 1.1e-20 104.8 248 31.0
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.4e-20 104.4 239 29.3
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 2.4e-20 103.6 206 35.9
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 3.1e-20 103.2 234 29.9
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 4.0e-20 102.8 252 32.9
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 8.9e-20 101.7 248 27.4
AT5G03920 Arabidopsis thaliana HOM05D021302 ORTHO05D021386 1.2e-19 101.3 154 41.6
Carub.0006s0288 Capsella rubella HOM05D021302 ORTHO05D021386 2.0e-19 100.5 153 38.6
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 4.4e-19 99.4 206 30.6
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 4.4e-19 99.4 270 28.5
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 5.8e-19 99.0 255 29.4
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 5.8e-19 99.0 216 31.0
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 9.9e-19 98.2 180 30.0
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 1.7e-18 97.4 258 28.7
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 3.8e-18 96.3 272 28.7
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 4.9e-18 95.9 251 31.9
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 6.4e-18 95.5 257 30.4
SalBow1G4167 Salvia bowleyana HOM05D007529 ORTHO05D007451 6.4e-18 95.5 246 28.0
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 8.4e-18 95.1 254 31.9
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 1.1e-17 94.7 267 26.6
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 1.4e-17 94.4 255 27.1
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 1.4e-17 94.4 206 29.1
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 1.4e-17 94.4 266 28.6
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 5.4e-17 92.4 271 26.2
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 7.1e-17 92.0 252 27.4
AL6G13510 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 2.7e-16 90.1 153 39.2
AL6G13520 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 1.3e-15 87.8 177 32.8
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 1.3e-15 87.8 256 27.3
AT5G03930 Arabidopsis thaliana HOM05D021302 ORTHO05D021386 1.7e-15 87.4 176 31.8
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 8.7e-15 85.1 117 39.3
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 2.5e-14 83.6 241 27.4
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 5.6e-14 82.4 245 29.4
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 2.8e-13 80.1 258 26.7
Ciclev10006854m.g Citrus clementina HOM05D007529 ORTHO05D007451 1.1e-12 78.2 247 26.3
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 9.0e-12 75.1 255 24.7
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 9.0e-12 75.1 257 25.7
THA.LOC104825174 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 5.8e-11 72.4 132 31.8
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 1.7e-10 70.9 263 27.0
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 9.3e-09 65.1 107 33.6
CiPaw.09G042800 Carya illinoinensis HOM05D007529 ORTHO05D007451 2.7e-08 63.5 206 26.7
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 7.8e-08 62.0 96 32.3
Nn1g01084 Nelumbo nucifera HOM05D007529 ORTHO05D007451 1.3e-07 61.2 100 35.0
Nn1g04791 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.3e-07 60.5 250 25.2
MELO3C014210.2 Cucumis melo HOM05D007529 ORTHO05D007451 8.7e-07 58.5 99 33.3
Aa31LG6G5370 Aethionema arabicum HOM05D005503 ORTHO05D007451 1.1e-06 58.2 95 42.1
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.5e-06 57.8 167 27.5


User provided reference genes

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