Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 4.1e-147 524.6 252 100.0
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 6.8e-126 454.1 257 86.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.9e-124 448.7 257 84.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 6.4e-124 447.6 257 84.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 7.1e-123 444.1 257 84.4
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 9.2e-123 443.7 256 84.8
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.1e-119 432.6 257 83.3
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-115 419.9 253 81.4
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.9e-113 411.8 253 79.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.9e-113 411.8 257 76.7
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.8e-111 405.6 254 80.3
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 5.3e-110 401.4 252 79.0
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.7e-108 396.4 244 79.1
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 5.4e-107 391.3 256 78.1
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.0e-105 385.6 252 77.8
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.5e-104 383.3 253 77.9
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.3e-104 382.1 259 74.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.9e-102 374.4 252 76.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 5.8e-93 344.7 253 71.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.5e-88 330.1 258 62.8
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.6e-88 327.4 257 62.3
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.1e-87 326.2 258 62.8
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.1e-87 326.2 254 63.8
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.7e-87 325.5 255 64.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.2e-87 324.7 254 63.0
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.4e-86 322.8 257 61.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 5.3e-86 321.6 258 62.8
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.2e-85 320.5 252 61.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-85 319.7 257 61.1
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.0e-85 319.7 260 62.3
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.4e-85 318.9 252 63.1
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 4.5e-85 318.5 253 63.2
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 4.5e-85 318.5 258 60.5
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.3e-84 317.0 252 62.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.9e-84 315.8 249 60.6
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.8e-84 315.5 252 61.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.5e-83 311.6 254 62.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 7.1e-83 311.2 196 74.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 7.1e-83 311.2 256 61.3
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.1e-83 311.2 256 61.3
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 7.1e-83 311.2 257 62.3
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.2e-82 310.5 261 59.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.2e-82 310.5 181 79.0
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.6e-82 310.1 177 78.5
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.5e-82 308.9 263 59.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 4.6e-82 308.5 219 68.5
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.6e-82 308.5 256 60.9
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.0e-82 308.1 259 62.2
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 7.9e-82 307.8 248 62.9
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.0e-81 307.4 266 61.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.3e-81 307.0 256 60.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.8e-81 306.6 262 59.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.8e-81 306.6 254 59.1
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.9e-81 305.4 257 58.8
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 5.1e-81 305.1 264 60.2
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.1e-81 305.1 257 59.5
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 6.7e-81 304.7 252 62.3
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.7e-81 304.7 253 60.9
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 8.7e-81 304.3 254 62.6
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.1e-80 303.9 252 60.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.9e-80 303.1 233 65.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.9e-80 303.1 245 60.8
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-80 302.8 253 59.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-80 302.8 252 61.1
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-80 302.8 257 58.0
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.3e-80 302.4 255 59.2
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.3e-80 302.4 258 59.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 5.7e-80 301.6 255 60.0
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 9.7e-80 300.8 257 60.7
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.3e-79 300.4 237 63.7
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.6e-79 300.1 265 59.2
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.6e-79 300.1 266 57.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.2e-79 299.7 258 60.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.8e-79 299.3 259 58.7
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.8e-79 299.3 258 58.9
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.7e-79 298.9 242 60.3
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 8.2e-79 297.7 269 56.9
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.1e-78 297.4 257 58.8
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.1e-78 297.4 259 55.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.1e-78 297.4 251 59.4
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.1e-78 297.4 267 58.1
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.8e-78 296.6 258 55.8
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-78 296.6 287 55.1
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 3.1e-78 295.8 261 57.9
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.0e-77 293.1 257 55.6
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.6e-77 292.7 261 56.3
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.7e-77 291.2 254 59.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 7.7e-77 291.2 267 55.1
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 7.7e-77 291.2 261 56.7
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.3e-76 290.4 204 66.2
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.2e-76 289.7 244 58.6
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.9e-76 289.3 266 56.4
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.8e-76 288.9 257 58.8
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.9e-75 286.6 176 73.9
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.9e-75 286.6 260 55.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.5e-75 286.2 264 54.2
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 5.5e-75 285.0 267 58.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.1e-74 283.1 174 76.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.7e-74 282.7 250 56.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.6e-74 282.3 248 54.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 4.6e-74 282.0 173 71.7
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.9e-74 281.2 173 71.7
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-73 280.4 173 71.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.4e-73 280.4 260 53.1
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.8e-73 280.0 252 56.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.8e-73 280.0 240 58.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.8e-73 280.0 240 58.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.1e-72 277.3 185 65.4
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-72 277.3 250 57.2
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-72 277.3 250 57.2
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.0e-72 276.6 185 67.0
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 2.0e-72 276.6 250 55.6
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 3.3e-72 275.8 173 70.5
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.1e-70 268.9 254 56.7
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 3.4e-69 265.8 212 63.2
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.7e-68 263.5 173 67.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.2e-68 263.1 169 70.4
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.1e-67 260.8 241 53.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.5e-67 259.6 212 62.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.5e-67 259.6 150 77.3
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.5e-67 258.5 250 50.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.2e-66 257.3 252 54.0
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.9e-65 252.3 257 51.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 5.1e-65 251.9 153 77.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 6.7e-65 251.5 214 61.2
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.5e-64 250.4 179 64.8
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.5e-64 250.4 231 56.3
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 9.1e-62 241.1 225 54.7
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.5e-61 240.4 138 78.3
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 4.5e-61 238.8 218 56.9
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.0e-58 228.0 251 50.6
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.1e-54 217.6 178 56.7
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.1e-54 215.7 258 48.8
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.1e-54 215.7 152 67.1
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.0e-53 213.4 188 55.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.5e-53 212.2 155 65.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 5.9e-53 211.8 165 59.4
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 9.4e-51 204.5 239 45.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.2e-50 204.1 144 63.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.6e-50 203.8 111 82.0
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.0e-49 201.1 169 56.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.7e-48 195.3 167 54.5
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.1e-46 189.5 250 44.4
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.5e-45 186.0 259 42.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-35 153.3 143 55.2
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.2e-32 144.4 91 73.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-30 136.0 209 38.8
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 5.4e-30 135.6 84 73.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.4e-30 135.6 94 69.1
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.8e-26 123.2 128 53.1
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.7e-26 122.5 88 59.1
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.0e-25 121.3 213 30.5
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.5e-24 117.5 63 85.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-24 116.7 71 77.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 3.2e-22 109.8 141 38.3
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.7e-21 106.7 77 66.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 7.3e-19 98.6 65 66.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.0e-17 92.8 67 58.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.9e-15 86.7 86 45.3
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.0e-12 78.2 39 84.6
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.0e-12 76.6 52 59.6
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.5e-11 74.3 52 61.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-09 68.2 51 54.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-09 68.2 52 53.8
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 7.6e-08 62.0 115 43.5
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.3e-07 58.5 43 55.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.1e-06 56.2 105 38.1


User provided reference genes

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