Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 8.5e-254 879.8 424 100.0
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 9.5e-221 770.0 420 87.4
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.6e-218 761.9 412 88.3
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 5.7e-218 760.8 413 88.4
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 5.7e-218 760.8 419 87.1
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 3.7e-217 758.1 419 86.4
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 4.1e-216 754.6 414 87.0
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 2.3e-214 748.8 412 86.2
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 3.3e-213 745.0 404 87.6
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 3.3e-213 745.0 404 87.6
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 5.6e-213 744.2 417 86.1
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 2.8e-212 741.9 418 85.6
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.4e-203 713.0 402 83.6
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 4.0e-179 631.7 400 73.5
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 9.9e-178 627.1 379 76.3
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.3e-177 626.7 401 71.8
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.7e-177 626.3 403 73.7
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.4e-176 623.2 379 75.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.2e-176 622.1 379 75.5
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 3.2e-176 622.1 391 73.9
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 2.7e-175 619.0 406 72.2
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 2.3e-174 615.9 395 72.2
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 5.1e-174 614.8 390 73.1
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 1.9e-173 612.8 379 73.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 5.6e-173 611.3 396 71.2
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 9.6e-173 610.5 397 71.5
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 2.1e-172 609.4 379 73.6
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 2.1e-172 609.4 418 69.4
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.8e-172 609.0 397 71.5
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 4.8e-172 608.2 402 70.6
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.1e-171 607.1 397 69.3
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.1e-171 607.1 397 70.0
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 1.8e-171 606.3 403 69.0
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.4e-171 605.9 406 69.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 4.5e-170 601.7 388 71.9
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 5.8e-170 601.3 403 71.0
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 7.6e-170 600.9 394 69.5
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.3e-169 600.1 407 69.8
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 6.4e-169 597.8 376 72.6
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.4e-169 597.8 402 70.4
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.1e-168 597.0 430 67.4
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.2e-168 595.5 376 72.3
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.4e-168 594.7 388 70.6
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.2e-167 593.6 383 72.3
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 4.6e-167 591.7 423 66.9
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 1.8e-166 589.7 409 66.7
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 3.9e-166 588.6 419 67.3
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 5.1e-166 588.2 417 66.9
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 5.1e-166 588.2 385 70.6
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.1e-165 587.0 393 68.4
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 5.6e-165 584.7 398 69.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 5.6e-165 584.7 424 66.5
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 9.6e-165 583.9 396 69.7
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 9.6e-165 583.9 382 70.9
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 9.6e-165 583.9 383 70.8
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.3e-164 583.6 401 68.1
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.6e-164 583.2 401 68.1
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 3.7e-164 582.0 403 67.5
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.2e-164 581.3 416 66.3
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.4e-163 580.1 415 67.2
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 3.1e-163 578.9 397 68.0
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 3.1e-163 578.9 397 68.0
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 6.9e-163 577.8 397 67.3
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.5e-162 576.6 376 70.2
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 3.4e-162 575.5 365 73.7
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.5e-162 575.1 414 65.5
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 5.8e-162 574.7 383 71.0
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 2.2e-161 572.8 389 69.4
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 3.8e-161 572.0 383 69.7
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 6.4e-161 571.2 376 70.2
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.1e-160 570.5 410 66.6
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 2.4e-160 569.3 360 74.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.5e-160 568.2 420 65.7
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 9.3e-160 567.4 411 65.9
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.2e-159 567.0 404 67.1
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.3e-158 563.5 374 71.7
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 6.7e-158 561.2 423 66.0
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.6e-156 556.6 416 65.6
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 2.1e-156 556.2 411 64.2
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.1e-155 553.9 414 64.5
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.7e-153 546.6 421 63.4
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 6.5e-153 544.7 381 67.2
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.0e-150 535.8 412 63.8
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.8e-147 526.6 381 66.1
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.0e-146 523.1 349 68.5
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 5.9e-146 521.5 353 69.4
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 6.5e-145 518.1 417 60.2
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.2e-143 513.8 395 60.3
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 3.7e-140 502.3 342 70.2
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 6.5e-137 491.5 403 56.6
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.0e-134 484.2 340 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.8e-134 483.4 394 58.1
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.2e-129 466.5 374 60.7
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 6.3e-124 448.4 330 64.8
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.4e-123 446.4 410 55.1
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.6e-122 443.0 299 70.2
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 5.0e-121 438.7 361 56.2
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.2e-120 436.0 386 57.3
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 4.0e-118 429.1 287 71.1
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 4.4e-117 425.6 423 48.7
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.4e-115 420.6 411 49.6
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.4e-115 419.9 297 68.0
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.6e-89 332.0 245 65.3
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.6e-87 326.2 233 65.7
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.1e-86 324.7 278 56.5
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 1.2e-85 321.2 392 44.6
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 5.1e-81 305.8 299 52.5
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.6e-79 300.8 179 77.1
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 5.2e-78 295.8 393 40.5
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.4e-77 293.1 167 79.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.4e-77 293.1 167 79.0
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 1.2e-74 284.6 452 38.9
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.0e-65 253.4 146 78.1
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 6.0e-50 202.6 139 64.0
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.0e-49 201.8 127 77.2
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.1e-46 191.8 216 50.5
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.5e-45 186.4 99 82.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 7.1e-43 179.1 299 36.8
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.6e-40 168.7 115 69.6
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.4e-38 164.9 101 72.3
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 9.0e-38 162.2 102 70.6
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.0e-36 158.7 86 81.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 4.2e-35 153.3 89 73.0
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.3e-33 147.5 95 74.7
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 6.3e-31 139.4 119 53.8
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.2e-28 131.0 80 68.8
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.6e-21 107.5 145 43.4
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 5.0e-20 103.2 196 37.2
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.0e-08 64.7 252 25.0
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 2.6e-08 64.3 235 23.8
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 2.6e-08 64.3 238 26.1
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 3.3e-08 63.9 238 26.1
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 5.7e-08 63.2 238 25.6
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 7.4e-08 62.8 219 27.4
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 7.4e-08 62.8 224 25.0
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.3e-07 62.0 275 24.0
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 1.7e-07 61.6 239 24.7
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.7e-07 61.6 252 24.6
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 1.7e-07 61.6 347 22.8
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 2.8e-07 60.8 228 25.0
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 4.8e-07 60.1 206 24.8
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 4.8e-07 60.1 206 24.8
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 6.3e-07 59.7 206 27.2
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 8.2e-07 59.3 205 25.4
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 8.2e-07 59.3 238 25.2
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 1.1e-06 58.9 206 26.7
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.1e-06 58.9 63 47.6
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 1.1e-06 58.9 238 24.8
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 1.1e-06 58.9 176 24.4
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 1.1e-06 58.9 258 23.3
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.4e-06 58.5 251 24.3
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 1.4e-06 58.5 205 25.4
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 1.4e-06 58.5 176 23.9
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 1.4e-06 58.5 205 22.4
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 1.8e-06 58.2 249 25.7
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 1.8e-06 58.2 235 22.1
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 1.8e-06 58.2 205 25.4
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 1.8e-06 58.2 206 24.8
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 1.8e-06 58.2 206 26.7
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 1.8e-06 58.2 206 26.7
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 1.8e-06 58.2 150 28.7
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 1.8e-06 58.2 176 25.0
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 2.4e-06 57.8 205 25.4
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 2.4e-06 57.8 205 25.4
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 2.4e-06 57.8 251 21.9
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 2.4e-06 57.8 205 25.4
TAR628G0260 Trochodendron aralioides HOM05D003825 ORTHO05D004491 2.4e-06 57.8 268 21.6
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 3.1e-06 57.4 176 24.4
Glyma.11G118500 Glycine max HOM05D003825 ORTHO05D004491 3.1e-06 57.4 206 24.3
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 3.1e-06 57.4 205 25.9
Glyma.12G043900 Glycine max HOM05D003825 ORTHO05D004491 4.1e-06 57.0 206 23.8
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 4.1e-06 57.0 207 25.1
Nitab4.5_0000215g0100 Nicotiana tabacum HOM05D003825 ORTHO05D004491 4.1e-06 57.0 182 25.3
Nitab4.5_0000557g0030 Nicotiana tabacum HOM05D003825 ORTHO05D004491 4.1e-06 57.0 176 25.6
Phvul.011G045900 Phaseolus vulgaris HOM05D003825 ORTHO05D004491 4.1e-06 57.0 206 24.3
SGA_v2.0_scaffold142G35668 Striga asiatica HOM05D002999 ORTHO05D003137 4.1e-06 57.0 350 21.1
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 5.3e-06 56.6 248 23.8
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 5.3e-06 56.6 238 22.3
VMungo1127G1308 Vigna mungo HOM05D003825 ORTHO05D004491 5.3e-06 56.6 206 24.3
DCAR_001583 Daucus carota HOM05D003825 ORTHO05D004491 7.0e-06 56.2 265 22.6
ECA236G2533 Erigeron canadensis HOM05D003825 ORTHO05D004491 7.0e-06 56.2 176 23.9
Thhalv10025475m.g Eutrema salsugineum HOM05D003825 ORTHO05D004491 7.0e-06 56.2 205 25.4
Nitab4.5_0000295g0130 Nicotiana tabacum HOM05D002999 ORTHO05D003137 7.0e-06 56.2 255 23.5
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 9.1e-06 55.8 240 21.7
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 9.1e-06 55.8 240 21.7
MD10G1077300 Malus domestica HOM05D003825 ORTHO05D004491 9.1e-06 55.8 207 24.6


User provided reference genes

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