Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 5.5e-90 334.3 176 100.0
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 7.0e-61 237.7 203 69.0
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 7.8e-60 234.2 203 66.0
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 2.1e-57 226.1 203 66.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.8e-57 225.7 201 67.2
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 8.0e-57 224.2 203 66.5
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 8.9e-56 220.7 207 63.8
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 8.3e-54 214.2 204 62.7
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 8.3e-54 214.2 204 62.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.8e-53 213.0 204 62.7
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.5e-52 208.8 204 62.3
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-51 206.8 204 61.8
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-51 205.3 201 60.7
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 6.6e-51 204.5 201 60.7
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 5.6e-50 201.4 199 59.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 4.7e-49 198.4 199 58.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 8.0e-49 197.6 199 59.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 8.0e-49 197.6 199 59.3
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 4.0e-48 195.3 199 58.8
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 5.2e-48 194.9 199 59.8
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.6e-47 192.6 209 56.9
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.4e-47 191.8 208 59.1
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 1.5e-42 176.8 177 59.9
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 4.3e-42 175.3 179 57.5
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.8e-40 169.9 176 57.4
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.3e-34 149.1 183 54.1
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.1e-27 125.2 197 43.7
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 4.3e-18 95.5 182 44.5
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 5.6e-18 95.1 182 43.4
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 4.8e-17 92.0 181 40.3
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 8.1e-17 91.3 181 40.3
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.1e-16 89.4 176 38.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.3e-16 88.6 179 41.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 5.3e-16 88.6 177 42.9
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 9.0e-16 87.8 194 39.2
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.5e-15 87.0 199 38.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.5e-15 85.5 172 37.8
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 7.6e-15 84.7 195 39.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 9.9e-15 84.3 191 37.7
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.3e-14 84.0 182 36.8
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.7e-14 83.6 186 37.1
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.2e-14 83.2 165 41.8
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.9e-14 82.8 176 40.3
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 4.9e-14 82.0 194 36.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 4.9e-14 82.0 193 40.4
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 6.4e-14 81.6 181 39.8
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-13 80.9 169 39.6
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.4e-13 80.5 156 41.7
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.4e-13 80.5 179 39.7
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.4e-13 80.5 189 39.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-13 80.1 177 37.9
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.9e-13 80.1 197 37.1
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.9e-13 80.1 180 39.4
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.2e-13 79.3 169 39.6
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.2e-13 79.3 184 36.4
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.2e-13 79.0 170 37.6
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.2e-13 79.0 197 37.6
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 4.2e-13 79.0 195 38.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.4e-13 78.6 179 38.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 5.4e-13 78.6 171 42.7
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 9.3e-13 77.8 198 37.4
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 9.3e-13 77.8 154 43.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.2e-12 77.4 182 38.5
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.1e-12 76.6 174 40.2
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.7e-12 76.3 169 37.9
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.7e-12 76.3 197 32.5
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.5e-12 75.9 177 36.2
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.0e-11 74.3 180 40.6
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.3e-11 73.9 194 32.5
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.3e-11 73.9 170 37.6
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.3e-11 73.9 177 40.1
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.8e-11 73.6 191 36.6
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.3e-11 73.2 162 38.9
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.3e-11 73.2 163 37.4
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-11 72.8 177 35.6
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-11 72.8 174 39.7
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.9e-11 72.4 155 40.0
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.9e-11 72.4 199 32.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 5.1e-11 72.0 191 36.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.1e-11 72.0 179 36.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 6.7e-11 71.6 182 38.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 6.7e-11 71.6 184 38.0
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 6.7e-11 71.6 171 36.8
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 6.7e-11 71.6 187 34.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 6.7e-11 71.6 193 35.2
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 8.7e-11 71.2 178 40.4
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 8.7e-11 71.2 188 38.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.1e-10 70.9 176 35.2
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.5e-10 69.7 192 32.3
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 7.4e-10 68.2 175 37.7
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 7.4e-10 68.2 183 35.0
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 9.6e-10 67.8 146 40.4
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.6e-09 67.0 170 37.6
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 2.1e-09 66.6 181 37.0
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.7e-09 65.9 169 35.5
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.7e-09 65.9 187 32.6
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 6.2e-09 65.1 164 35.4
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 6.2e-09 65.1 179 35.2
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.8e-08 63.5 181 35.4
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.8e-08 63.5 177 36.2
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.8e-08 63.5 166 36.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.4e-08 63.2 195 36.4
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.4e-08 63.2 176 35.8
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.1e-08 62.8 177 35.6
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 3.1e-08 62.8 156 35.3
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.0e-08 62.4 170 31.8
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.3e-08 62.0 168 36.9
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 6.9e-08 61.6 187 34.2
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 9.0e-08 61.2 138 39.1
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.2e-07 60.8 187 35.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.5e-07 60.5 152 38.8
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.5e-07 60.5 145 35.2
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.0e-07 60.1 181 35.9
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.6e-07 59.7 144 38.2
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.4e-07 59.3 161 32.9
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.4e-07 59.3 167 35.3
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.5e-07 58.9 167 35.9
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 4.5e-07 58.9 144 33.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 5.8e-07 58.5 161 37.3
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 7.6e-07 58.2 170 35.3
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 7.6e-07 58.2 174 31.6
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 9.9e-07 57.8 179 33.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-06 57.4 171 35.1
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.7e-06 57.0 173 35.3
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 8.4e-06 54.7 161 34.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 8.4e-06 54.7 165 32.7


User provided reference genes

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