Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 9.9e-161 570.1 292 100.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 8.4e-144 513.8 292 90.1
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.1e-143 513.5 292 89.7
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.4e-143 513.1 292 89.4
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 2.4e-143 512.3 292 89.4
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 5.1e-141 504.6 292 88.0
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.1e-140 503.4 292 87.7
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 4.8e-139 498.0 292 86.6
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 4.8e-139 498.0 292 86.6
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 4.8e-139 498.0 292 86.6
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 6.9e-138 494.2 292 86.3
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 9.3e-127 457.2 294 78.9
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.9e-117 425.2 295 72.5
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 3.9e-117 425.2 295 72.5
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.5e-116 423.3 295 74.2
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 3.3e-116 422.2 294 74.5
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.7e-116 420.6 295 73.2
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.2e-115 419.5 291 72.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.8e-115 419.1 295 72.9
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 6.3e-115 417.9 294 72.4
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.1e-114 417.2 295 72.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 1.1e-114 417.2 295 71.9
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.8e-114 416.4 291 73.2
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.8e-114 416.4 296 72.0
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 4.1e-114 415.2 295 71.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 4.1e-114 415.2 294 72.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 5.3e-114 414.8 294 71.8
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 9.1e-114 414.1 291 71.5
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.2e-113 413.7 293 72.0
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 71.5
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.2e-113 413.7 295 72.2
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.2e-113 413.7 294 72.8
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.5e-113 413.3 295 72.2
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.6e-113 412.5 296 72.0
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.5e-113 411.8 295 71.5
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 7.7e-113 411.0 302 70.9
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.0e-112 410.6 294 71.1
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.7e-112 409.8 294 70.7
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.7e-112 409.8 302 70.9
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 2.2e-112 409.5 291 71.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.2e-112 409.5 292 70.5
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 2.2e-112 409.5 294 71.8
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.1e-111 407.1 298 70.5
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.9e-111 406.4 294 71.1
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.9e-111 406.4 295 70.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.5e-111 406.0 294 71.4
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 4.2e-111 405.2 295 69.2
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.2e-110 403.7 296 69.9
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.6e-110 403.3 295 69.5
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.1e-110 402.9 295 70.2
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 2.7e-110 402.5 292 69.9
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 2.7e-110 402.5 295 70.2
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 4.7e-110 401.7 294 70.7
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.0e-109 400.6 292 68.8
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.0e-109 400.6 294 69.7
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 1.0e-109 400.6 294 69.0
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 1.4e-109 400.2 296 69.3
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.8e-109 399.8 296 68.9
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.8e-109 399.8 295 68.5
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.8e-109 399.8 289 70.9
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 6.7e-109 397.9 295 69.5
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.1e-108 397.1 294 68.7
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.5e-108 396.7 295 68.8
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.5e-108 396.7 295 68.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 2.6e-108 396.0 294 68.7
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 3.3e-108 395.6 294 70.4
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.3e-108 395.6 295 68.5
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 3.3e-108 395.6 294 68.7
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.7e-108 394.8 295 67.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.3e-107 393.7 292 68.8
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.3e-107 393.7 289 70.2
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.7e-107 393.3 295 68.5
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.2e-107 392.9 295 67.8
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 2.2e-107 392.9 296 67.6
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 3.7e-107 392.1 293 68.9
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 4.8e-107 391.7 294 66.3
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 4.8e-107 391.7 295 67.8
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 4.8e-107 391.7 295 69.2
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 8.2e-107 391.0 295 67.1
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.4e-106 390.2 295 67.1
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.1e-106 388.7 296 68.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.2e-105 387.1 295 66.4
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.2e-105 387.1 296 67.6
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.2e-105 387.1 296 68.2
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.6e-105 386.7 295 67.5
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 2.0e-105 386.3 292 68.5
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 7.7e-105 384.4 312 64.1
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.0e-104 384.0 292 67.1
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.7e-104 383.3 292 67.5
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.7e-104 383.3 296 67.6
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.7e-104 383.3 296 66.9
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.2e-104 382.9 312 63.8
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.9e-104 382.5 339 60.8
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.5e-104 381.3 311 64.0
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.5e-103 380.2 295 66.1
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-103 379.8 294 67.0
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.5e-103 378.3 282 67.4
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.2e-103 377.9 294 67.0
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 7.2e-103 377.9 259 74.1
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.6e-102 376.7 297 65.3
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 2.1e-102 376.3 288 67.7
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 4.7e-102 375.2 295 66.1
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.0e-102 374.4 248 75.8
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 1.0e-101 374.0 282 67.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.2e-101 371.7 277 69.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.5e-100 370.2 297 64.3
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.3e-99 367.1 284 65.1
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 2.2e-99 366.3 293 65.9
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.7e-94 349.4 317 59.6
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 8.8e-85 317.8 294 60.2
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.1e-82 310.8 216 71.8
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 1.6e-81 307.0 233 68.2
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 4.5e-81 305.4 294 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.0e-80 304.3 287 52.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 2.3e-80 303.1 222 69.8
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 8.6e-80 301.2 221 68.8
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.0e-77 294.3 288 52.4
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-77 292.4 279 58.4
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.0e-76 290.0 290 50.3
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.6e-76 289.7 290 51.4
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 2.6e-76 289.7 262 55.0
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.4e-75 285.0 290 50.7
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.1e-74 282.3 295 51.2
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 7.0e-74 281.6 223 64.6
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 5.2e-69 265.4 219 62.6
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.8e-68 261.9 269 54.3
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 8.6e-64 248.1 254 52.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-61 238.4 250 55.2
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 2.2e-59 233.4 176 68.2
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-55 219.5 223 55.2
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 5.6e-55 218.8 150 74.0
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.4e-52 209.1 203 56.2
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 7.8e-49 198.4 162 58.6
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 5.2e-45 185.7 282 37.2
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-44 183.3 149 62.4
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 4.4e-44 182.6 142 60.6
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 4.6e-41 172.6 135 64.4
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-36 156.8 151 57.0
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 2.6e-36 156.8 181 50.8
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 2.6e-36 156.8 302 34.4
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 5.6e-31 139.0 105 65.7
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.9e-27 126.7 106 64.2
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-26 124.0 106 65.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 2.1e-25 120.6 98 58.2
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.2e-19 100.5 273 25.6
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 2.9e-19 100.1 66 77.3
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-18 97.4 116 52.6
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 2.1e-17 94.0 128 44.5
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 4.6e-17 92.8 91 58.2
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 8.7e-16 88.6 81 55.6
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 9.0e-13 78.6 113 44.2
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 3.4e-12 76.6 113 43.4
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 5.1e-08 62.8 48 62.5
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 6.3e-06 55.8 60 50.0


User provided reference genes

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