Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 5.7e-95 351.3 231 100.0
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 1.8e-64 250.0 177 78.0
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 3.0e-59 232.6 241 66.8
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 3.0e-59 232.6 241 66.8
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 3.0e-59 232.6 241 66.8
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 4.3e-58 228.8 247 65.2
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 5.6e-58 228.4 208 64.4
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 1.6e-57 226.9 188 68.6
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 2.1e-57 226.5 198 69.2
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-57 226.5 166 73.5
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 1.4e-56 223.8 201 66.7
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 6.8e-56 221.5 196 70.4
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 7.5e-55 218.0 192 65.6
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.7e-54 216.9 181 67.4
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-53 214.2 141 78.0
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 3.2e-53 212.6 233 64.4
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 1.6e-52 210.3 232 62.5
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.0e-52 208.4 171 71.3
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 7.8e-52 208.0 243 63.0
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 2.3e-51 206.5 238 61.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.1e-50 204.1 164 67.1
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 1.6e-49 200.3 164 64.0
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.1e-49 199.9 139 71.2
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 6.8e-48 194.9 180 61.1
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 3.4e-47 192.6 141 67.4
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 2.2e-46 189.9 140 67.1
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.8e-46 189.1 189 57.1
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 4.9e-46 188.7 133 71.4
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 4.9e-46 188.7 138 67.4
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 1.4e-45 187.2 140 65.7
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 1.4e-45 187.2 140 65.7
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 4.2e-45 185.7 135 67.4
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 5.4e-45 185.3 192 57.3
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 7.1e-45 184.9 140 65.7
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 9.2e-45 184.5 138 65.2
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 9.2e-45 184.5 171 57.3
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.2e-44 184.1 196 55.1
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 2.1e-44 183.3 191 51.8
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 3.5e-44 182.6 195 52.3
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 6.0e-44 181.8 174 57.5
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 7.8e-44 181.4 140 65.0
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 7.8e-44 181.4 140 65.0
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 7.8e-44 181.4 201 52.2
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 7.8e-44 181.4 138 65.2
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.0e-43 181.0 140 68.6
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.7e-43 180.3 134 65.7
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.3e-43 179.9 144 63.9
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 3.0e-43 179.5 166 58.4
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 5.1e-43 178.7 140 63.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 5.1e-43 178.7 169 60.4
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 5.1e-43 178.7 164 57.3
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.1e-42 177.6 177 57.1
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.9e-42 176.8 135 63.7
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 2.5e-42 176.4 138 63.8
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 3.3e-42 176.0 135 65.2
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 3.3e-42 176.0 194 55.2
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 4.3e-42 175.6 188 54.8
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 5.6e-42 175.3 193 51.8
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 7.3e-42 174.9 188 52.1
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 9.6e-42 174.5 189 56.1
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 9.6e-42 174.5 132 65.9
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-41 173.7 210 55.2
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.6e-41 173.7 210 55.2
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.6e-41 173.7 210 55.2
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.6e-41 173.7 202 53.5
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.6e-41 173.7 141 61.7
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.1e-41 173.3 183 53.6
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 2.8e-41 172.9 191 56.0
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 2.8e-41 172.9 191 56.0
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.8e-41 172.9 162 58.0
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 3.6e-41 172.6 191 56.0
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-40 171.0 191 55.5
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 1.8e-40 170.2 191 55.5
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.8e-40 170.2 200 52.0
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.4e-40 169.9 188 51.1
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 2.4e-40 169.9 140 61.4
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.4e-40 169.9 195 54.9
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 3.1e-40 169.5 196 55.6
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 4.0e-40 169.1 178 53.9
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 4.0e-40 169.1 192 50.5
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 5.3e-40 168.7 160 60.6
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 5.3e-40 168.7 160 60.6
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 6.9e-40 168.3 169 53.3
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 1.5e-39 167.2 139 61.2
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.5e-39 167.2 139 61.2
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.5e-39 167.2 139 61.9
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.0e-39 166.8 139 61.9
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.4e-39 166.0 139 61.2
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 4.4e-39 165.6 133 62.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 7.6e-39 164.9 135 61.5
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 9.9e-39 164.5 156 57.1
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 1.7e-38 163.7 139 61.2
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 2.9e-38 162.9 179 54.7
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 3.8e-38 162.5 178 51.7
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 8.4e-38 161.4 137 60.6
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 8.4e-38 161.4 135 62.2
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 8.4e-38 161.4 142 59.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.1e-37 161.0 162 53.1
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.9e-37 160.2 135 58.5
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.9e-37 160.2 130 62.3
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 1.9e-37 160.2 131 64.9
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-37 159.5 141 61.7
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.2e-37 159.5 135 58.5
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 3.2e-37 159.5 135 59.3
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 4.2e-37 159.1 132 62.1
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 4.2e-37 159.1 130 61.5
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 4.2e-37 159.1 189 54.0
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 4.2e-37 159.1 134 61.2
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 9.3e-37 157.9 168 51.2
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.2e-36 157.5 141 55.3
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.6e-36 157.1 135 58.5
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.6e-36 157.1 193 56.5
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.1e-36 156.8 130 61.5
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.7e-35 153.7 139 59.0
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 1.7e-35 153.7 130 58.5
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.5e-34 150.6 126 58.7
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 9.6e-34 147.9 196 54.1
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 2.1e-33 146.7 192 53.6
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.6e-33 146.0 139 58.3
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 3.6e-33 146.0 142 54.2
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 4.8e-33 145.6 142 54.2
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.3e-32 142.1 168 52.4
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 9.0e-32 141.4 130 56.9
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.6e-31 139.8 189 49.7
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 4.9e-30 135.6 143 52.4
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 2.4e-29 133.3 191 49.7
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 7.1e-29 131.7 102 63.7
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.0e-27 126.3 191 48.2
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 6.7e-27 125.2 136 53.7
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 9.6e-26 121.3 138 52.2
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 2.8e-25 119.8 187 44.4
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.1e-24 117.9 162 49.4
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.0e-23 113.6 98 56.1
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 4.9e-22 109.0 110 55.5
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 6.2e-17 92.0 119 49.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.6e-15 86.7 67 68.7
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 7.6e-15 85.1 139 39.6
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 7.4e-10 68.6 69 59.4
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 5.0e-06 55.8 97 46.4
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 6.5e-06 55.5 97 46.4
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 6.5e-06 55.5 188 29.8


User provided reference genes

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