Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.3e-177 626.3 319 100.0
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 3.2e-128 462.2 321 73.8
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 5.4e-128 461.5 321 74.1
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 3.9e-126 455.3 319 72.7
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.9e-125 453.0 321 72.3
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.2e-119 433.7 321 68.5
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 2.7e-119 432.6 322 69.3
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 2.7e-119 432.6 322 69.3
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 3.5e-119 432.2 322 68.6
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 6.0e-119 431.4 321 68.5
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 7.8e-119 431.0 322 68.3
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 3.0e-118 429.1 319 69.6
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 2.3e-110 402.9 321 64.5
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.5e-109 399.4 321 65.7
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.8e-99 366.7 322 62.7
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.7e-89 333.6 316 55.4
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.8e-89 332.4 319 56.4
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 6.5e-89 331.6 318 55.7
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 1.4e-88 330.5 320 54.1
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 5.5e-88 328.6 317 57.7
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.5e-87 325.9 317 57.1
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 1.3e-86 323.9 320 56.2
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 9.7e-85 317.8 320 55.9
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 1.3e-84 317.4 275 61.8
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.6e-84 317.0 320 55.6
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.8e-84 316.2 304 57.9
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 2.8e-84 316.2 312 55.1
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 3.1e-83 312.8 313 55.3
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 4.1e-83 312.4 316 53.2
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 5.3e-83 312.0 312 54.8
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 9.0e-83 311.2 321 53.6
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 1.2e-82 310.8 320 55.0
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 1.5e-82 310.5 275 58.9
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.7e-81 307.0 316 53.8
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 3.8e-81 305.8 313 54.3
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 8.5e-81 304.7 316 54.1
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 2.5e-80 303.1 316 53.5
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.7e-79 299.7 318 52.8
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 2.7e-79 299.7 230 63.5
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 3.6e-79 299.3 314 51.0
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 2.3e-78 296.6 308 51.3
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 3.0e-78 296.2 321 52.6
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 3.0e-78 296.2 230 63.0
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 8.8e-78 294.7 231 64.5
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.5e-77 293.9 237 60.8
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 2.5e-77 293.1 273 56.4
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 9.7e-77 291.2 294 53.7
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.3e-76 290.8 285 52.6
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 2.2e-76 290.0 216 66.2
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 2.2e-76 290.0 230 63.5
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.8e-76 289.7 294 54.1
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.8e-76 289.7 308 51.6
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 4.8e-76 288.9 237 59.9
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 4.8e-76 288.9 283 54.1
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.4e-75 287.3 294 54.1
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 1.4e-75 287.3 316 50.3
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.8e-75 287.0 300 51.3
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 3.1e-75 286.2 302 54.0
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.1e-75 286.2 302 54.0
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 3.1e-75 286.2 303 54.1
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.9e-75 285.0 284 53.9
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 9.1e-75 284.6 302 53.6
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 2.0e-74 283.5 281 52.7
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 2.0e-74 283.5 237 58.2
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 7.7e-74 281.6 237 57.8
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 7.7e-74 281.6 237 57.8
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.0e-73 281.2 293 50.9
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 2.2e-73 280.0 230 60.9
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 5.0e-73 278.9 304 51.6
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.9e-72 276.9 292 51.7
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 5.5e-72 275.4 280 51.8
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.2e-71 274.2 230 61.3
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.6e-71 273.9 283 50.5
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 2.1e-71 273.5 328 48.2
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 2.7e-71 273.1 230 58.7
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 4.7e-71 272.3 230 60.9
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 7.9e-71 271.6 230 59.6
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.4e-70 270.8 270 53.0
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.8e-70 270.4 283 52.7
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 2.3e-70 270.0 304 50.0
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 3.0e-70 269.6 230 59.6
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 3.0e-70 269.6 304 50.0
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 3.9e-70 269.2 291 50.9
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 5.1e-70 268.9 286 53.1
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 2.0e-69 266.9 303 49.2
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 5.7e-69 265.4 236 56.8
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 7.4e-69 265.0 276 53.3
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 2.2e-68 263.5 275 53.1
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 2.4e-67 260.0 214 60.7
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 1.2e-66 257.7 216 58.8
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 2.6e-66 256.5 315 47.3
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 3.5e-66 256.1 216 57.9
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 5.9e-66 255.4 314 45.9
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.0e-65 254.6 256 54.3
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 2.9e-65 253.1 316 46.2
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.9e-65 253.1 310 49.0
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 6.5e-65 251.9 230 56.1
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 1.5e-61 240.7 313 44.4
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 2.4e-59 233.4 294 46.3
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 4.1e-59 232.6 234 50.4
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 4.1e-59 232.6 308 42.2
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 1.2e-58 231.1 306 44.4
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 4.7e-55 219.2 220 50.0
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 1.0e-46 191.4 154 63.6
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.4e-46 191.0 154 61.0
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 1.0e-41 174.9 151 55.6
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 1.9e-40 170.6 151 55.0
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.6e-39 167.5 151 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 5.2e-38 162.5 246 40.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 5.2e-38 162.5 151 53.6
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.8e-35 154.1 232 37.9
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 1.2e-31 141.4 106 65.1
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 1.4e-30 137.9 216 38.0
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 9.8e-29 131.7 155 47.1
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.2e-27 126.7 251 34.3
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 7.8e-26 122.1 98 63.3
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 2.5e-24 117.1 87 60.9
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 9.8e-21 105.1 223 35.4
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 8.3e-20 102.1 78 61.5
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 6.6e-17 92.4 66 65.2
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 9.9e-13 78.6 73 54.8
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.3e-09 67.4 89 41.6
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.2e-07 61.6 76 50.0
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 4.7e-07 59.7 72 41.7


User provided reference genes

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