Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 2.7e-126 455.3 225 100.0
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 3.3e-103 378.6 225 79.6
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 2.1e-102 375.9 223 80.3
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.4e-101 373.2 226 79.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 4.0e-101 371.7 225 79.6
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 4.0e-101 371.7 226 79.2
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 4.0e-101 371.7 224 79.9
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 5.2e-101 371.3 225 80.0
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 5.2e-101 371.3 223 80.3
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 6.8e-101 370.9 226 78.3
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 5.7e-100 367.9 225 79.1
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 1.1e-98 363.6 219 79.0
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 7.8e-97 357.5 222 77.0
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.9e-90 336.3 228 69.3
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.6e-89 333.2 225 71.1
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 4.6e-89 331.6 226 69.9
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.0e-88 330.5 227 69.6
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.3e-88 330.1 228 70.6
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.7e-88 329.7 228 69.3
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 2.3e-88 329.3 228 69.3
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 3.9e-88 328.6 224 69.2
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 3.3e-87 325.5 228 67.5
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.2e-86 323.6 224 68.8
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.6e-86 323.2 227 67.8
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 2.8e-86 322.4 249 62.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.8e-86 322.4 226 68.6
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 3.6e-86 322.0 228 67.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 3.6e-86 322.0 227 66.1
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 6.2e-86 321.2 224 68.3
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.1e-85 320.5 243 64.6
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.4e-85 320.1 226 66.4
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.4e-85 320.1 223 69.1
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.8e-85 319.7 228 67.1
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 5.2e-85 318.2 228 67.1
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.2e-84 317.0 228 67.5
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.2e-84 317.0 228 67.1
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.5e-84 316.6 228 68.0
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 2.6e-84 315.8 227 67.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 2.6e-84 315.8 225 66.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 7.5e-84 314.3 228 66.2
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 1.3e-83 313.5 223 65.0
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.7e-83 313.2 223 67.3
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 3.7e-83 312.0 229 67.7
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 8.3e-83 310.8 226 66.4
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 8.3e-83 310.8 235 64.3
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.1e-82 310.5 228 65.8
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.4e-82 310.1 227 63.9
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 1.9e-82 309.7 223 66.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.4e-82 309.3 225 64.0
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 2.4e-82 309.3 224 65.6
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 7.1e-82 307.8 229 63.8
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 7.1e-82 307.8 224 66.5
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.1e-81 306.2 227 63.4
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.5e-81 305.4 227 63.0
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 4.6e-81 305.1 225 64.9
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 4.6e-81 305.1 226 64.2
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 6.0e-81 304.7 225 66.2
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.0e-80 303.9 227 63.9
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.7e-80 303.1 229 65.5
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.7e-80 303.1 227 64.3
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 5.1e-80 301.6 221 64.3
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 5.1e-80 301.6 224 62.5
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 1.1e-79 300.4 221 64.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.5e-79 300.1 226 63.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.9e-79 299.7 228 62.3
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 3.3e-79 298.9 228 62.7
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 5.6e-79 298.1 222 63.5
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 1.6e-78 296.6 224 62.5
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.6e-78 296.6 229 63.3
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 6.2e-78 294.7 228 64.5
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 2.3e-77 292.7 222 61.7
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 6.8e-77 291.2 223 61.4
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 8.9e-77 290.8 221 62.9
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.0e-76 289.7 224 61.2
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 4.4e-76 288.5 206 66.5
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 2.9e-75 285.8 228 61.8
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 4.9e-75 285.0 226 59.7
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.2e-73 280.4 226 61.5
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 2.1e-73 279.6 221 61.1
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 1.0e-72 277.3 228 61.0
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.7e-72 276.6 228 61.0
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-71 273.9 246 56.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-71 273.5 246 56.9
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.6e-70 270.0 245 56.7
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.9e-67 259.2 163 71.8
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 1.2e-65 253.8 163 71.2
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 4.6e-65 251.9 218 59.2
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 4.6e-65 251.9 237 52.3
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.6e-62 242.3 163 69.9
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 4.0e-61 238.8 226 51.8
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 4.4e-60 235.3 143 74.1
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 2.4e-58 229.6 157 65.0
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 3.2e-58 229.2 175 62.9
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 5.4e-58 228.4 170 63.5
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 9.3e-58 227.6 236 52.5
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 7.9e-57 224.6 236 52.1
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.0e-56 224.2 222 51.8
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 5.1e-56 221.9 217 51.6
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 5.6e-55 218.4 173 61.3
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 1.8e-53 213.4 226 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 4.0e-53 212.2 224 46.0
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 4.0e-53 212.2 119 81.5
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 2.0e-52 209.9 171 58.5
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 4.5e-52 208.8 119 79.0
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 7.6e-52 208.0 168 60.7
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.1e-50 204.1 167 60.5
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 4.6e-49 198.7 222 45.9
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 3.8e-43 179.1 142 59.2
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 2.5e-42 176.4 250 40.4
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 1.4e-37 160.6 125 63.2
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.4e-37 159.8 107 68.2
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 4.6e-33 145.6 145 53.1
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.1e-31 141.0 134 56.7
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 6.9e-29 131.7 144 50.7
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.4e-26 124.0 107 56.1
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 6.1e-25 118.6 222 34.2
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 2.2e-22 110.2 90 61.1
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 2.2e-22 110.2 90 61.1
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.3e-14 84.3 56 67.9
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.3e-14 84.3 56 67.9
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.3e-14 82.0 62 62.9
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 6.1e-09 65.5 47 61.7
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.5e-07 60.8 188 26.6
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 7.5e-07 58.5 31 80.6
Lsat_1_v5_gn_5_39280 Lactuca sativa HOM05D002021 ORTHO05D002077 6.3e-06 55.5 188 28.2


User provided reference genes

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