Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 3.6e-76 288.1 141 100.0
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.5e-71 271.6 141 91.5
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 7.8e-71 270.4 141 90.8
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.3e-70 268.9 141 90.8
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 6.6e-70 267.3 141 90.8
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-69 266.5 141 89.4
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-69 266.5 141 89.4
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.1e-69 266.5 141 89.4
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.1e-69 266.5 141 89.4
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.5e-69 266.2 141 90.1
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.5e-69 266.2 141 90.1
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.9e-69 265.8 141 90.1
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 5.6e-69 264.2 141 87.9
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 5.6e-69 264.2 141 87.9
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 7.3e-69 263.8 141 89.4
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 6.2e-68 260.8 140 87.9
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 8.1e-68 260.4 141 89.4
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 4.0e-67 258.1 141 87.9
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 4.0e-67 258.1 141 87.9
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 4.0e-67 258.1 141 87.9
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 4.0e-67 258.1 141 87.9
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.2e-67 257.7 140 86.4
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 86.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 85.7
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 8.9e-67 256.9 140 86.4
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 86.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 85.7
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.2e-66 256.5 137 88.3
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.0
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.7
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.5e-66 256.1 140 85.7
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.5e-66 256.1 137 88.3
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 85.7
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.0e-66 255.8 137 87.6
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 85.7
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 85.7
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 85.7
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 85.7
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.6e-66 255.4 140 85.7
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 3.4e-66 255.0 137 88.3
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 85.0
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 85.7
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 85.7
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 3.4e-66 255.0 140 85.7
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 4.4e-66 254.6 140 85.7
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.4e-66 254.6 137 88.3
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 4.4e-66 254.6 140 85.0
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 4.4e-66 254.6 140 85.0
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 5.8e-66 254.2 140 85.7
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 5.8e-66 254.2 140 85.7
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 5.8e-66 254.2 140 85.7
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 5.8e-66 254.2 140 85.0
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 7.6e-66 253.8 169 76.9
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 7.6e-66 253.8 140 84.3
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 7.6e-66 253.8 140 84.3
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 7.6e-66 253.8 140 85.0
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 85.0
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 84.3
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 85.7
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 84.3
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 85.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 9.9e-66 253.4 140 85.0
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 84.3
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 84.3
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 85.0
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 84.3
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 84.3
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 84.3
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 85.0
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 84.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 84.3
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 83.6
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 84.3
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.8e-65 251.5 141 85.1
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 84.3
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 84.3
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.9e-65 251.1 137 87.6
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 4.9e-65 251.1 140 83.6
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 6.4e-65 250.8 140 84.3
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 8.4e-65 250.4 140 82.9
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 8.4e-65 250.4 140 83.6
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 82.9
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 82.1
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.4e-64 248.8 140 83.6
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 7.1e-64 247.3 140 82.1
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 7.1e-64 247.3 140 82.1
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 2.1e-63 245.7 137 83.9
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.0e-63 244.2 150 79.3
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 7.8e-63 243.8 137 85.4
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.3e-62 243.0 137 85.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.3e-62 243.0 137 82.5
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.3e-62 242.3 137 83.9
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.3e-62 242.3 163 73.6
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 3.0e-62 241.9 137 81.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 3.9e-62 241.5 137 81.0
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 5.1e-62 241.1 137 83.2
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.1e-61 240.0 128 87.5
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 3.3e-61 238.4 166 69.9
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.6e-60 236.1 141 80.9
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.8e-60 234.6 139 80.6
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.2e-60 234.2 137 78.8
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.8e-59 232.6 137 78.8
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 5.8e-58 227.6 204 58.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 8.4e-57 223.8 137 74.5
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 3.2e-56 221.9 198 59.1
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.2e-56 221.9 152 72.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 3.2e-56 221.9 140 75.7
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 6.7e-54 214.2 139 67.6
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.5e-53 213.0 126 77.0
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.5e-53 212.2 114 87.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.5e-50 203.0 137 65.7
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 7.6e-50 200.7 121 76.9
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.1e-48 196.8 160 65.0
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.7e-47 192.2 137 60.6
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 7.9e-47 190.7 135 61.5
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.3e-44 183.3 100 85.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 8.1e-44 180.6 99 86.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 1.4e-43 179.9 97 86.6
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.5e-37 159.1 116 67.2
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 3.1e-27 125.6 139 46.0
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 1.2e-26 123.6 70 80.0
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.0e-25 120.6 67 82.1
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.2e-25 119.4 67 82.1
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 1.1e-24 117.1 140 47.9
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.9e-24 116.3 70 74.3
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 8.5e-17 90.9 43 95.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 4.8e-12 75.1 162 32.7
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 6.3e-12 74.7 49 73.5
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 9.1e-11 70.9 117 35.9
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 2.6e-10 69.3 44 72.7
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 6.5e-09 64.7 155 27.7
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.7e-07 59.3 36 72.2
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 6.1e-07 58.2 83 39.8
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 3.0e-06 55.8 133 27.8


User provided reference genes

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