Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 4.0e-96 354.8 181 100.0
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 8.5e-78 293.9 177 87.6
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.4e-77 293.1 176 86.9
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.9e-77 292.7 177 87.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 5.5e-77 291.2 176 86.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-76 290.0 179 84.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.6e-76 289.7 179 83.8
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.6e-76 288.5 177 85.3
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 5.1e-75 284.6 180 82.8
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 5.1e-75 284.6 180 82.8
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.3e-74 282.0 180 82.2
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 4.4e-74 281.6 175 83.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 9.1e-72 273.9 181 79.6
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-71 273.5 179 81.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-69 266.2 177 80.2
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.9e-69 266.2 177 80.2
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 9.4e-69 263.8 180 77.8
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 3.8e-62 241.9 188 71.8
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-60 236.5 184 71.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.6e-58 229.2 172 69.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.8e-57 225.7 183 68.3
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-53 213.4 177 65.5
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 7.2e-53 211.1 180 66.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.4e-53 210.7 177 65.5
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.0e-51 205.7 180 65.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-51 205.7 176 63.6
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.0e-51 205.3 175 66.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.2e-50 203.8 174 64.9
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.5e-50 203.4 188 61.7
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.5e-50 203.4 183 63.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.0e-50 203.0 181 63.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.0e-50 203.0 172 65.1
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.0e-50 203.0 183 61.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.0e-50 203.0 183 61.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 2.6e-50 202.6 176 64.2
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 3.4e-50 202.2 182 63.7
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.4e-50 202.2 175 62.3
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.7e-50 201.4 175 63.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.3e-49 200.3 180 61.7
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.3e-49 200.3 177 62.7
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 1.3e-49 200.3 173 61.8
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.7e-49 199.9 180 61.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.7e-49 199.9 177 62.7
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.2e-49 199.5 179 62.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.8e-49 199.1 178 61.8
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.8e-49 199.1 176 64.8
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 3.7e-49 198.7 184 60.3
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.8e-49 198.4 184 60.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 4.8e-49 198.4 180 64.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.3e-49 198.0 180 60.0
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 8.3e-49 197.6 175 62.3
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 8.3e-49 197.6 183 61.2
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.1e-48 197.2 179 61.5
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.4e-48 196.8 179 63.1
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.4e-48 196.1 175 64.0
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.4e-48 196.1 175 64.0
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.4e-48 196.1 180 59.4
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.4e-48 196.1 179 59.2
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 3.1e-48 195.7 183 61.7
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 3.1e-48 195.7 175 61.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 4.1e-48 195.3 181 60.8
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 5.4e-48 194.9 174 62.1
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.4e-48 194.9 175 61.7
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 5.4e-48 194.9 188 59.6
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.1e-48 194.1 179 62.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.1e-48 194.1 179 62.0
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.1e-48 194.1 179 62.0
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.6e-47 193.4 174 61.5
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.6e-47 193.4 174 61.5
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.6e-47 193.4 184 60.9
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.6e-47 193.4 174 60.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.6e-47 193.4 175 63.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-47 193.4 183 59.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.0e-47 193.0 173 63.0
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.7e-47 192.6 203 56.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.7e-47 192.6 177 62.7
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 5.9e-47 191.4 175 60.0
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.9e-47 191.4 173 61.3
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 5.9e-47 191.4 178 61.8
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 7.7e-47 191.0 175 58.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.0e-46 190.7 174 62.6
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.0e-46 190.7 179 60.3
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.7e-46 189.9 175 59.4
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.3e-46 189.5 177 58.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.9e-46 189.1 177 62.1
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.8e-46 188.7 205 55.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 5.0e-46 188.3 170 60.0
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 6.6e-46 188.0 202 55.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.1e-45 187.2 186 56.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.5e-45 186.8 198 57.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.9e-45 186.4 173 60.7
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.5e-45 186.0 187 57.2
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.5e-45 186.0 178 60.1
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 5.5e-45 184.9 189 55.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 7.2e-45 184.5 173 60.1
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.8e-44 182.6 185 59.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 6.1e-44 181.4 175 56.6
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.4e-43 180.3 131 71.0
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 2.3e-43 179.5 189 58.2
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 3.0e-43 179.1 175 58.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.8e-43 177.9 182 56.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-42 177.2 186 54.3
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.5e-42 176.8 153 63.4
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.4e-42 175.3 179 60.3
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 5.7e-42 174.9 186 57.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 7.5e-42 174.5 144 66.0
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-41 172.9 180 57.2
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.4e-40 170.2 173 51.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 5.4e-40 168.3 172 58.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.2e-39 167.2 193 51.8
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.9e-39 164.9 110 71.8
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.9e-38 162.5 174 53.4
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 5.0e-38 161.8 155 60.6
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 7.3e-37 157.9 159 57.9
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-36 157.1 136 65.4
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 3.6e-36 155.6 192 49.0
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.8e-35 153.3 130 56.9
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 3.4e-34 149.1 195 46.7
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.4e-34 149.1 140 63.6
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 3.7e-33 145.6 151 59.6
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 9.2e-32 141.0 106 65.1
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-31 140.2 90 75.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.2e-28 130.6 116 59.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.4e-27 127.1 114 57.9
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.2e-26 124.0 123 61.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.0e-26 123.2 121 55.4
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-25 119.8 117 55.6
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 8.3e-25 117.9 101 59.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.4e-24 117.1 96 66.7
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.9e-24 116.7 101 58.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.2e-24 115.9 101 57.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.2e-24 115.9 104 57.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 5.4e-24 115.2 105 57.1
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.0e-22 109.4 110 51.8
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 9.5e-21 104.4 124 54.0
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.8e-20 102.8 104 50.0
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 6.2e-20 101.7 110 52.7
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 8.1e-20 101.3 104 51.9
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-19 100.1 102 60.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.3e-19 99.8 82 57.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.1e-19 99.4 106 50.9
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 4.0e-19 99.0 96 51.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.9e-19 97.8 172 40.1
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 4.4e-18 95.5 99 50.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.7e-17 92.4 69 63.8
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.1e-16 88.2 64 70.3
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.6e-15 87.0 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.7e-15 86.3 131 42.7
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 6.6e-14 81.6 142 42.3
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 5.6e-13 78.6 70 57.1
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 7.3e-13 78.2 94 44.7
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 3.6e-12 75.9 138 34.8
AL8G34840 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 2.9e-09 66.2 121 42.1
AL1G23700 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 3.8e-09 65.9 72 56.9
AL855U10020 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 3.8e-09 65.9 72 56.9
AL1G34190 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 6.4e-09 65.1 121 41.3
AL8G33300 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.6e-07 60.5 52 61.5
AL1G53010 Arabidopsis lyrata HOM05D017491 ORTHO05D005185 1.7e-06 57.0 57 56.1
BraA02t04844Z Brassica rapa HOM05D017491 ORTHO05D005185 5.1e-06 55.5 79 45.6


User provided reference genes

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