Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 4.1e-182 641.3 339 100.0
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 3.2e-155 552.0 343 84.0
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.1e-150 535.4 344 82.6
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 3.5e-149 531.9 349 81.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.7e-140 503.1 344 78.8
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 2.0e-136 489.6 341 76.8
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 2.6e-136 489.2 344 75.9
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 2.8e-135 485.7 344 76.7
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 5.8e-128 461.5 337 73.6
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.3e-127 460.3 337 73.3
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.4e-126 456.8 344 73.0
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.4e-121 440.3 344 70.3
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.7e-119 432.2 336 67.6
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.3e-107 392.1 342 62.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.1e-105 386.0 338 60.9
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.6e-104 382.9 335 60.0
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 5.8e-104 381.7 341 59.5
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.9e-103 379.4 326 62.3
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.8e-103 379.0 326 62.3
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 4.9e-103 378.6 308 64.0
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 6.4e-103 378.3 347 60.2
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 8.4e-103 377.9 352 59.4
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.1e-102 377.5 333 60.7
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.4e-102 377.1 325 62.5
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.4e-102 377.1 325 62.5
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 1.9e-102 376.7 334 60.8
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.9e-102 376.7 331 63.1
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 4.2e-102 375.6 356 58.7
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 2.7e-101 372.9 343 58.3
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.0e-100 369.4 339 61.1
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 8.7e-100 367.9 328 61.0
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.5e-99 366.3 338 57.7
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-99 365.5 334 59.0
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-99 365.5 334 59.0
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-99 365.5 334 59.0
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-99 365.5 334 59.0
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 5.6e-99 365.2 345 57.1
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.6e-99 365.2 331 59.8
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 5.6e-99 365.2 338 57.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 5.6e-99 365.2 335 58.8
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 2.1e-98 363.2 334 59.0
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 2.8e-98 362.8 338 56.2
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.1e-97 360.9 344 57.8
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.8e-97 360.1 341 56.3
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.4e-97 359.8 377 55.2
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 6.9e-97 358.2 331 58.6
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 6.9e-97 358.2 346 56.1
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.2e-96 357.5 337 55.2
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 4.4e-96 355.5 340 57.9
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 5.8e-96 355.1 261 67.4
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.8e-96 355.1 331 57.4
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 5.8e-96 355.1 336 57.4
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 9.9e-96 354.4 331 57.7
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 2.2e-95 353.2 338 55.6
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 3.8e-95 352.4 329 58.7
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 8.4e-95 351.3 327 59.0
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.4e-94 350.5 332 56.3
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.9e-94 350.1 330 54.8
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 7.1e-94 348.2 336 55.1
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 7.1e-94 348.2 330 54.5
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 9.3e-94 347.8 335 56.1
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 2.1e-93 346.7 336 57.1
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 3.5e-93 345.9 346 54.9
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 1.7e-92 343.6 328 56.7
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.3e-92 343.2 342 55.8
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 1.1e-91 340.9 351 54.1
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.1e-91 340.9 353 53.8
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 6.2e-90 335.1 330 54.2
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 2.4e-89 333.2 333 52.9
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 4.0e-89 332.4 328 54.9
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 5.3e-89 332.0 330 55.2
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 2.6e-88 329.7 330 54.2
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 3.4e-88 329.3 353 53.3
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 8.4e-87 324.7 331 55.3
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.1e-86 324.3 332 51.8
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 4.2e-86 322.4 332 54.2
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 5.4e-86 322.0 361 50.4
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 2.7e-85 319.7 336 53.6
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.7e-85 319.7 347 52.2
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.6e-85 318.9 343 56.6
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 1.0e-84 317.8 343 56.6
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 1.9e-83 313.5 340 55.0
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.5e-83 313.2 372 48.9
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.5e-83 313.2 372 48.9
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 7.4e-83 311.6 337 51.0
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 3.7e-82 309.3 356 48.9
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 8.1e-82 308.1 339 53.1
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.6e-80 303.1 338 52.4
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.4e-80 302.8 330 52.4
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 3.4e-80 302.8 334 51.8
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.5e-80 302.4 321 52.3
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 2.5e-78 296.6 343 50.4
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 4.2e-78 295.8 332 53.3
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 4.2e-78 295.8 317 49.5
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.9e-75 287.0 333 47.7
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 5.8e-72 275.4 324 56.2
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 7.1e-70 268.5 350 45.4
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 6.0e-69 265.4 335 46.0
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 6.7e-68 261.9 186 65.1
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 7.4e-67 258.5 327 46.8
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.8e-65 253.8 338 43.5
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.1e-65 252.7 185 65.9
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 5.3e-65 252.3 307 46.9
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.2e-64 251.1 204 56.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 2.2e-63 246.9 324 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 5.5e-62 242.3 330 41.2
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 6.7e-60 235.3 328 42.7
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 2.5e-59 233.4 342 41.2
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 2.1e-53 213.8 248 51.2
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.7e-53 213.4 366 37.7
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 4.4e-51 206.1 204 59.3
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 4.4e-51 206.1 326 41.4
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 5.7e-51 205.7 200 51.0
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 7.4e-51 205.3 129 71.3
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 3.0e-44 183.3 330 36.1
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.5e-43 181.0 127 63.8
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.2e-42 177.2 169 65.7
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 1.3e-39 167.9 350 34.0
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.2e-35 154.8 319 36.4
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.7e-34 151.0 324 33.3
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.7e-29 133.7 254 40.2
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 2.6e-27 127.1 143 42.7
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 9.1e-25 118.6 77 74.0
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.7e-23 114.4 86 62.8
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.3e-23 114.0 142 52.8
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 4.7e-21 106.3 69 68.1
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 5.2e-20 102.8 136 54.4
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 6.3e-18 95.9 60 71.7
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.1e-17 93.2 101 53.5
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.0e-15 88.6 138 35.5
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 6.1e-13 79.3 140 40.0
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 2.6e-11 73.9 121 32.2
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.0e-07 62.0 239 28.9
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 1.3e-07 61.6 182 24.2
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.5e-06 58.2 58 48.3


User provided reference genes

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