Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 8.0e-70 266.9 131 100.0
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.5e-44 183.0 131 73.3
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 9.9e-44 180.3 131 71.8
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.9e-43 178.7 131 71.8
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 4.9e-43 177.9 131 71.8
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 8.4e-43 177.2 131 71.0
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.1e-42 176.8 131 71.0
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 6.0e-41 171.0 131 68.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 6.2e-38 161.0 131 66.4
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 6.2e-38 161.0 131 66.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 8.1e-38 160.6 131 64.1
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 3.1e-37 158.7 131 63.4
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.1e-33 146.0 131 58.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.1e-33 146.0 131 58.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.1e-33 146.0 127 61.4
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-33 145.6 131 58.0
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.5e-33 145.2 131 58.0
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.9e-33 144.1 131 57.3
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 7.9e-33 144.1 131 57.3
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.0e-32 143.7 128 60.9
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.3e-32 143.3 127 61.4
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.9e-32 141.7 131 56.5
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 5.1e-32 141.4 131 56.5
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.9e-31 139.4 127 57.5
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 2.5e-31 139.0 130 56.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 5.6e-31 137.9 127 57.5
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 5.6e-31 137.9 131 58.0
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 7.4e-31 137.5 127 59.1
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 9.6e-31 137.1 127 58.3
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.1e-30 136.0 127 62.2
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 3.6e-30 135.2 131 59.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.6e-30 135.2 127 56.7
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 4.8e-30 134.8 127 59.1
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 8.1e-30 134.0 127 58.3
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.1e-29 133.7 127 56.7
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-29 133.7 128 56.2
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.4e-29 133.3 127 57.5
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.4e-29 133.3 127 58.3
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.8e-29 132.9 127 56.7
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.1e-29 132.1 127 55.1
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.0e-29 131.7 127 55.9
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 5.3e-29 131.3 127 59.1
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 5.3e-29 131.3 130 54.6
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 5.3e-29 131.3 127 56.7
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.0e-29 130.6 127 55.1
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.2e-28 130.2 127 55.1
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.0e-28 129.4 127 53.5
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.6e-28 129.0 127 54.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.6e-28 129.0 124 55.6
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.6e-28 129.0 124 55.6
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.4e-28 128.6 127 53.5
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.5e-28 128.3 116 58.6
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 4.5e-28 128.3 127 55.9
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 4.5e-28 128.3 126 55.6
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 7.6e-28 127.5 126 54.8
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.3e-27 126.7 130 53.8
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.3e-27 126.7 127 55.1
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.7e-27 126.3 127 54.3
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.7e-27 126.3 128 54.7
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.7e-27 126.3 126 53.2
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.8e-27 125.2 126 56.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.8e-27 125.2 126 55.6
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.8e-27 125.2 126 55.6
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 3.8e-27 125.2 130 52.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 4.9e-27 124.8 126 58.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 8.4e-27 124.0 130 54.6
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.1e-26 123.6 127 52.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.4e-26 123.2 127 55.1
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.4e-26 123.2 127 55.1
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.4e-26 122.5 132 53.8
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.2e-26 122.1 127 54.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.2e-26 122.1 128 55.5
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 5.5e-26 121.3 127 53.5
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 5.5e-26 121.3 127 54.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 7.1e-26 120.9 127 53.5
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 7.1e-26 120.9 127 54.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 9.3e-26 120.6 127 55.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.2e-25 120.2 121 52.1
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.6e-25 119.8 127 53.5
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.6e-25 119.8 129 51.9
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.6e-25 119.8 127 51.2
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.6e-25 119.8 127 51.2
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.1e-25 119.4 126 54.8
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 2.7e-25 119.0 125 52.0
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 3.5e-25 118.6 127 52.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 3.5e-25 118.6 127 53.5
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 3.5e-25 118.6 122 52.5
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.0e-25 117.9 127 52.0
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 7.9e-25 117.5 127 53.5
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 7.9e-25 117.5 127 51.2
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 7.9e-25 117.5 127 52.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.0e-24 117.1 131 55.7
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.3e-24 116.7 128 50.8
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.3e-24 116.7 127 52.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.8e-24 116.3 60 83.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.0e-24 115.5 92 59.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 6.7e-24 114.4 132 51.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 6.7e-24 114.4 102 64.7
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.7e-24 114.4 124 51.6
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.7e-24 114.4 132 53.0
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.1e-23 113.6 129 51.2
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.1e-23 113.6 117 53.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.1e-23 113.6 127 52.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.5e-23 113.2 117 53.8
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.9e-23 112.8 61 78.7
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.5e-23 112.5 128 52.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 3.3e-23 112.1 127 48.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 3.3e-23 112.1 118 53.4
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 4.3e-23 111.7 130 53.1
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 4.3e-23 111.7 117 52.1
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 7.4e-23 110.9 134 52.2
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 9.6e-23 110.5 120 51.7
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.4e-21 105.9 101 53.5
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 5.3e-21 104.8 116 50.0
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 6.9e-21 104.4 61 73.8
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 9.0e-21 104.0 127 48.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.0e-20 102.8 117 53.8
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.6e-20 102.4 117 52.1
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 3.4e-20 102.1 117 53.0
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 3.4e-20 102.1 119 52.1
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.7e-19 99.8 116 50.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.7e-19 99.8 102 59.8
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.7e-19 99.8 126 47.6
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 2.2e-19 99.4 119 49.6
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.4e-19 97.4 117 46.2
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.1e-18 97.1 116 47.4
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.1e-18 97.1 119 49.6
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 5.5e-18 94.7 113 45.1
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.1e-18 94.4 117 50.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 7.1e-18 94.4 110 48.2
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 7.9e-17 90.9 50 78.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.9e-15 86.3 119 45.4
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 7.4e-15 84.3 86 47.7
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.9e-12 74.7 136 37.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 7.6e-12 74.3 102 48.0
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 5.0e-11 71.6 134 39.6
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.4e-11 70.9 102 48.0
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 7.2e-10 67.8 87 50.6
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 7.2e-10 67.8 124 33.1
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 9.3e-10 67.4 83 48.2
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 6.1e-09 64.7 101 43.6
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 7.9e-09 64.3 58 46.6
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.0e-08 62.4 102 40.2
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.0e-08 62.4 37 73.0
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 3.9e-08 62.0 69 40.6
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.7e-08 60.8 102 39.2
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.5e-07 60.1 102 41.2
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 1.6e-06 56.6 55 47.3


User provided reference genes

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