Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 7.5e-132 474.2 296 100.0
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 3.3e-95 352.4 294 80.6
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.0e-92 343.2 296 76.0
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 7.8e-89 331.3 294 71.8
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 2.6e-84 316.2 294 73.8
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.6e-81 307.0 300 67.3
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 3.6e-78 295.8 294 71.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.9e-77 291.6 295 68.8
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.9e-75 285.4 295 68.5
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 4.6e-73 278.9 300 68.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 7.9e-73 278.1 293 65.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 3.9e-72 275.8 297 71.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.2e-68 264.2 270 70.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.3e-67 260.8 294 65.3
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 7.9e-65 251.5 296 57.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 3.0e-64 249.6 278 69.8
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 3.0e-64 249.6 278 69.8
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.0e-64 249.6 299 60.9
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.1e-63 247.7 299 56.5
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.5e-63 247.3 290 65.2
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 4.1e-61 239.2 268 61.2
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.3e-61 238.8 264 60.2
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.9e-61 238.4 270 58.9
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 9.0e-61 238.0 270 59.3
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 9.0e-61 238.0 267 58.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.7e-59 233.8 288 52.8
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 3.8e-59 232.6 302 54.3
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 8.5e-59 231.5 308 55.8
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.5e-59 231.5 296 51.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.5e-59 231.5 296 51.0
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 8.5e-59 231.5 270 63.7
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-58 231.1 292 56.5
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-58 230.7 294 63.3
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.4e-58 230.7 299 60.5
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.9e-58 230.3 294 63.3
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.2e-58 229.6 276 65.6
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.2e-58 229.2 294 62.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 5.5e-58 228.8 298 53.7
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.2e-57 227.6 292 62.7
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.6e-57 227.3 296 50.3
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.1e-57 226.9 265 52.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.1e-57 226.9 268 59.3
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 4.6e-57 225.7 294 50.7
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 6.1e-57 225.3 265 52.5
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.1e-57 225.3 294 50.7
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 6.1e-57 225.3 284 62.3
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 6.1e-57 225.3 266 54.9
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 7.9e-57 224.9 268 58.2
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.3e-56 224.2 277 57.4
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.3e-56 223.4 267 51.7
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 3.9e-56 222.6 293 50.5
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 6.7e-56 221.9 286 57.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.5e-55 220.7 275 57.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-55 220.7 289 61.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 5.7e-55 218.8 265 52.8
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.7e-55 218.8 294 55.4
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 9.7e-55 218.0 268 57.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 8.2e-54 214.9 274 58.4
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.1e-53 214.5 294 56.1
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.1e-53 214.5 270 56.3
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.8e-53 213.8 299 56.5
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.4e-53 213.4 278 51.1
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 2.4e-53 213.4 272 56.2
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.1e-53 213.0 264 59.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 3.1e-53 213.0 293 49.5
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 5.3e-53 212.2 228 60.1
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.5e-52 210.7 314 51.3
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.7e-51 207.2 266 56.0
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 3.8e-51 206.1 287 54.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 8.5e-51 204.9 287 53.7
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.9e-50 203.8 283 49.1
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.5e-50 203.4 257 59.1
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 5.5e-50 202.2 283 57.2
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.6e-49 200.7 270 48.5
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.6e-49 200.7 294 52.7
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.6e-49 200.7 227 53.7
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.1e-49 200.3 308 54.9
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 6.1e-49 198.7 316 49.4
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 6.1e-49 198.7 267 50.6
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.0e-48 198.0 268 49.6
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.4e-48 197.6 263 58.6
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 2.3e-48 196.8 271 45.8
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.0e-48 196.4 212 70.3
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 3.9e-48 196.1 296 48.0
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.7e-48 195.3 261 58.6
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.1e-47 194.5 261 58.6
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.1e-47 194.5 296 52.4
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 5.7e-47 192.2 286 43.4
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 7.4e-47 191.8 286 52.1
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 9.7e-47 191.4 259 50.2
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.7e-46 190.7 283 51.6
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.1e-45 188.0 299 44.8
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.4e-45 187.6 295 50.5
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.4e-45 186.8 255 53.7
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 5.3e-45 185.7 295 48.1
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 6.9e-45 185.3 367 41.1
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 1.5e-44 184.1 221 61.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.5e-44 184.1 302 50.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 3.4e-44 183.0 298 46.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.9e-44 182.2 278 53.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.7e-43 180.6 278 55.8
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.2e-43 180.3 222 59.9
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 5.0e-43 179.1 294 46.9
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.5e-42 176.8 293 52.2
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 3.2e-42 176.4 294 49.7
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 5.5e-42 175.6 227 54.2
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.6e-41 174.1 227 54.6
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 3.9e-40 169.5 294 48.6
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.1e-39 167.9 270 50.4
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.2e-38 163.7 322 40.4
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.7e-38 162.9 350 37.1
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.8e-38 162.5 285 53.7
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.4e-37 161.0 231 47.6
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 9.1e-37 158.3 224 52.2
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.6e-36 157.5 294 50.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.0e-35 154.8 233 48.5
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.7e-35 154.1 285 43.2
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-34 151.4 240 43.8
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.1e-33 147.1 286 40.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 6.1e-33 145.6 258 40.3
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.0e-32 142.9 182 53.8
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.4e-29 134.4 250 45.2
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 1.7e-27 127.5 184 47.8
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.2e-26 122.1 243 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 3.0e-24 116.7 233 35.6
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.0e-24 116.7 153 54.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 5.7e-23 112.5 248 39.9
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.3e-22 111.3 218 41.3
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.8e-22 109.4 67 80.6
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.9e-19 100.1 64 81.2
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.5e-19 99.0 151 61.6
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-18 98.2 69 75.4
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.2e-18 96.7 66 71.2
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 7.2e-18 95.5 64 79.7
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.2e-17 94.7 259 40.5
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.6e-17 94.4 91 58.2
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.3e-14 84.7 67 65.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.2e-14 84.0 77 55.8
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.4e-13 81.3 103 43.7
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.3e-11 73.9 162 33.3
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.3e-10 70.1 68 52.9
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 8.0e-09 65.5 228 36.4
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.4e-08 64.7 264 26.9
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 1.2e-07 61.6 72 47.2
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 6.4e-06 55.8 275 31.3


User provided reference genes

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