Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 2.0e-163 579.3 357 100.0
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 8.1e-64 248.4 374 52.7
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.3e-57 226.5 388 50.0
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 2.6e-54 216.9 412 46.6
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 5.8e-54 215.7 362 51.7
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 1.1e-52 211.5 375 50.4
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 1.4e-52 211.1 380 51.6
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 2.4e-52 210.3 367 49.6
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 7.1e-52 208.8 372 47.6
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 3.9e-50 203.0 399 44.1
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.1e-49 201.4 396 44.9
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.9e-49 200.7 389 47.8
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 3.1e-47 193.4 383 46.5
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 1.5e-46 191.0 378 50.8
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 2.9e-45 186.8 370 51.4
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 6.4e-45 185.7 379 43.5
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 3.5e-43 179.9 383 49.1
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.5e-41 173.7 374 43.3
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 3.6e-40 169.9 411 45.5
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 2.5e-33 147.1 409 38.9
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.4e-31 141.4 363 40.2
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.3e-29 134.8 375 38.1
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 2.4e-28 130.6 364 37.9
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 2.4e-28 130.6 383 36.0
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 6.7e-26 122.5 393 34.6
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 8.7e-26 122.1 372 38.4
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 8.7e-26 122.1 364 36.3
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 1.5e-25 121.3 364 35.2
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 5.6e-25 119.4 393 34.4
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-24 117.9 381 34.6
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 3.7e-24 116.7 366 39.9
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 1.1e-23 115.2 381 34.4
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-23 114.8 363 39.4
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 5.8e-22 109.4 364 32.7
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 7.6e-22 109.0 363 33.9
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 3.8e-21 106.7 392 31.9
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 4.9e-21 106.3 397 28.0
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 8.4e-21 105.5 360 38.3
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.4e-21 105.5 365 40.5
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.2e-20 103.6 361 38.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.7e-19 100.5 364 40.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.3e-18 97.4 363 39.9
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 9.7e-17 92.0 388 36.6
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.9e-12 77.8 322 30.7
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 8.8e-10 68.9 367 30.5
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.1e-09 68.6 367 30.2
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.9e-09 67.8 362 35.1
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.9e-09 67.8 365 32.6
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.9e-09 67.8 364 34.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.5e-09 67.4 370 31.9
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 7.4e-09 65.9 83 43.4
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 9.7e-09 65.5 190 31.6
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.3e-08 65.1 291 33.3
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.8e-08 63.2 367 30.0
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.3e-08 62.8 181 34.8
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 6.3e-08 62.8 367 31.1
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.4e-07 60.8 366 31.1
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 5.3e-07 59.7 365 33.2
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 2.0e-06 57.8 80 37.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.6e-06 57.4 363 32.0
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.5e-06 56.6 76 42.1
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.5e-06 56.6 82 36.6
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 7.7e-06 55.8 380 31.6


User provided reference genes

Program Settings