Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 3499.9 1826 100.0
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 3097.0 1826 87.6
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 3090.8 1826 87.6
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 3087.7 1840 86.9
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 3082.7 1824 87.1
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 3071.2 1825 87.2
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 3064.2 1827 87.0
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 3062.3 1824 86.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 3054.6 1828 86.9
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2982.6 1840 84.8
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2972.6 1838 84.7
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2852.4 1823 81.2
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2422.9 1823 67.7
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2394.0 1810 67.5
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2392.8 1819 67.0
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2364.0 1819 66.3
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2357.8 1822 67.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2357.4 1822 66.6
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2354.3 1823 66.4
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2351.6 1820 66.6
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2349.7 1818 65.7
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2346.2 1823 66.0
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2334.3 1822 66.5
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2332.0 1849 66.0
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2323.9 1823 65.8
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2323.1 1849 65.8
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2318.1 1822 65.0
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2307.3 1873 64.4
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2301.9 1822 65.1
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2284.6 1818 64.9
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2269.6 1819 64.2
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2260.3 1812 64.3
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2254.6 1805 63.6
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2249.2 1824 62.7
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2245.7 1810 63.9
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2238.8 1819 64.2
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2237.6 1816 62.8
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2236.8 1810 63.1
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2230.3 1823 63.1
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2225.3 1818 64.3
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2224.5 1822 63.4
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2223.7 1814 63.8
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2223.0 1820 63.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2220.3 1811 63.8
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2218.4 1818 62.3
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2213.7 1811 63.5
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2211.0 1816 63.7
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2211.0 1810 63.1
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2210.3 1807 64.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2189.8 1815 62.8
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2187.5 1823 61.6
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2186.8 1816 61.4
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2186.4 1818 61.3
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2185.2 1814 61.1
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2184.1 1819 63.2
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2182.5 1846 62.1
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2181.0 1830 61.2
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2180.2 1852 62.9
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2175.2 1824 61.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2171.0 1817 61.6
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2169.4 1834 61.9
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2159.8 1823 60.8
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2153.3 1823 62.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2150.9 1829 61.4
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2150.9 1824 61.7
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2146.3 1836 60.9
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2144.0 1800 62.8
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2140.9 1810 61.7
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2139.8 1825 61.1
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2134.4 2366 50.9
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2130.9 1990 56.8
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2098.9 1857 58.8
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2095.5 1830 60.1
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2072.7 1815 59.6
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2067.0 1900 58.5
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1998.8 1823 57.6
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1940.6 1477 67.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1891.3 1502 63.9
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1867.4 1398 67.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1771.9 1362 72.4
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1756.9 1355 65.4
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1739.5 1327 66.7
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1719.1 1308 66.9
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1716.0 1393 63.2
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1629.0 1862 47.5
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1562.0 1349 61.2
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1558.5 1871 46.1
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1518.1 1876 45.3
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1517.7 1836 47.7
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1513.0 1339 60.1
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1478.0 1233 63.6
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1399.0 1647 46.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1380.9 1142 62.6
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1349.0 1092 63.2
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1246.1 1127 58.0
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1128.6 901 61.8
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1100.5 1056 55.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.4e-284 984.2 1575 37.2
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.5e-272 943.0 886 55.6
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 6.7e-247 859.0 1796 33.7
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.8e-244 850.9 1734 33.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.5e-230 804.7 636 64.8
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.5e-219 766.5 791 51.1
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 4.2e-193 680.2 609 60.1
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.1e-192 677.9 499 71.1
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.2e-171 609.0 463 67.6
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 2.3e-170 604.7 457 68.5
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.5e-169 601.3 667 51.1
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.7e-160 570.5 2023 26.7
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.6e-152 545.4 506 56.1
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 4.6e-147 527.3 446 62.6
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 4.8e-144 517.3 460 62.2
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.0e-142 511.9 347 72.3
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-129 469.5 307 74.6
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 8.2e-104 383.6 831 33.1
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.3e-103 380.9 367 56.7
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.9e-100 372.5 1651 23.5
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 2.5e-92 345.5 297 61.3
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.2e-88 332.4 303 57.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 2.0e-86 325.9 294 58.2
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.0e-77 294.7 161 87.0
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 9.8e-73 280.4 354 52.3
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 8.6e-69 267.3 201 68.7
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 7.5e-65 254.2 341 41.1
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.3e-61 243.4 272 47.4
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 4.7e-59 235.0 339 43.4
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 2.6e-57 229.2 157 82.2
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.4e-57 228.8 204 54.9
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 6.4e-56 224.6 159 66.0
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.2e-43 181.4 147 59.2
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.1e-42 180.6 208 48.1
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.0e-42 178.7 174 59.2
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 4.2e-39 168.7 121 71.9
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 5.1e-37 161.8 294 38.1
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 9.6e-36 157.5 167 53.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 7.6e-33 147.9 217 43.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.9e-33 147.5 256 38.7
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 3.9e-29 135.6 121 62.0
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 9.6e-28 131.0 171 45.0
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 6.2e-27 128.3 171 44.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 4.0e-26 125.6 86 72.1
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 6.9e-26 124.8 169 39.1
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 9.9e-25 120.9 141 44.7
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 2.2e-24 119.8 75 78.7
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 5.4e-23 115.2 78 73.1
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 8.1e-19 101.3 150 39.3
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-18 99.8 84 54.8
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 6.9e-18 98.2 223 30.0
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 1.5e-17 97.1 169 35.5
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.8e-17 95.1 107 48.6
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 2.1e-14 86.7 92 51.1
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.3e-13 84.0 174 32.2
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 8.7e-13 81.3 94 55.3
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 3.7e-11 75.9 55 61.8
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.1e-10 72.8 117 40.2
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 5.3e-10 72.0 63 54.0
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 5.8e-09 68.6 92 45.7
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.5e-07 63.2 115 31.3
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 7.1e-07 61.6 59 59.3
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 2.7e-06 59.7 66 48.5


User provided reference genes

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