Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.9e-47 191.8 117 100.0
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.8e-37 158.7 120 70.8
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.5e-35 152.9 117 84.6
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 2.6e-35 152.1 118 73.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 4.4e-35 151.4 118 81.4
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 4.4e-35 151.4 118 81.4
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 4.4e-35 151.4 118 81.4
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 7.5e-35 150.6 118 78.8
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.7e-34 149.4 117 70.9
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 4.9e-34 147.9 118 72.9
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 4.9e-34 147.9 118 72.9
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 4.9e-34 147.9 118 72.9
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 8.3e-34 147.1 117 67.5
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 8.3e-34 147.1 119 71.4
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.4e-33 146.4 117 67.5
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 2.4e-33 145.6 118 72.9
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.4e-33 145.6 118 78.0
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.4e-33 145.6 117 66.7
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 5.4e-33 144.4 116 72.4
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 5.4e-33 144.4 116 72.4
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.0e-28 128.3 117 58.1
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 8.9e-28 127.1 117 58.1
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.2e-27 126.7 117 57.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 2.6e-27 125.6 105 76.2
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 2.6e-27 125.6 121 58.7
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 7.5e-27 124.0 117 56.4
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 7.5e-27 124.0 119 58.0
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.5e-27 124.0 117 55.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.7e-26 122.9 120 58.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.2e-26 122.5 118 61.0
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.9e-26 122.1 119 59.7
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 2.9e-26 122.1 125 56.8
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 3.7e-26 121.7 118 55.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.4e-26 120.9 117 55.6
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 8.3e-26 120.6 112 55.4
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.1e-25 120.2 119 57.1
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.4e-25 119.8 117 54.7
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.9e-25 119.4 120 55.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.4e-25 119.0 119 56.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 3.2e-25 118.6 120 55.8
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 3.2e-25 118.6 119 56.3
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 3.2e-25 118.6 119 56.3
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 4.1e-25 118.2 120 55.0
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 5.4e-25 117.9 119 56.3
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 5.4e-25 117.9 118 55.9
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 9.2e-25 117.1 119 54.6
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 9.2e-25 117.1 119 63.0
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 9.2e-25 117.1 113 57.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 9.2e-25 117.1 117 54.7
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.2e-24 116.7 119 54.6
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.0e-24 115.9 118 56.8
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 2.7e-24 115.5 119 57.1
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.5e-24 115.2 119 55.5
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.5e-24 115.2 121 56.2
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 4.6e-24 114.8 120 55.0
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 6.0e-24 114.4 118 55.9
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 6.0e-24 114.4 121 57.0
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.8e-24 114.0 121 57.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 7.8e-24 114.0 116 55.2
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.3e-23 113.2 117 61.5
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.7e-23 112.8 114 56.1
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.3e-23 112.5 112 63.4
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 2.3e-23 112.5 113 54.0
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 120 54.2
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 54.6
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.3e-23 112.5 117 64.1
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 3.0e-23 112.1 112 53.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.9e-23 111.7 121 55.4
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 5.0e-23 111.3 118 50.8
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 5.0e-23 111.3 119 55.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 6.6e-23 110.9 111 53.2
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.6e-23 110.9 117 53.0
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 52.9
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.1e-22 110.2 120 53.3
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.1e-22 110.2 120 53.3
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-22 110.2 112 52.7
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 118 55.1
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 52.1
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.5e-22 109.8 116 61.2
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.9e-22 109.4 116 60.3
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 1.9e-22 109.4 117 52.1
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.5e-22 109.0 112 51.8
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.5e-22 109.0 113 53.1
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 3.3e-22 108.6 121 52.9
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 3.3e-22 108.6 118 49.2
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 4.3e-22 108.2 119 54.6
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 5.6e-22 107.8 119 55.5
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 5.6e-22 107.8 117 52.1
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 5.6e-22 107.8 113 54.0
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 7.3e-22 107.5 114 54.4
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 9.5e-22 107.1 113 61.1
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.2e-21 106.7 119 52.1
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.6e-21 106.3 119 53.8
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 2.1e-21 105.9 119 51.3
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 2.1e-21 105.9 120 52.5
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 2.1e-21 105.9 119 52.1
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 2.8e-21 105.5 129 51.9
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.8e-21 105.5 119 53.8
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 2.3e-20 102.4 121 52.9
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 5.2e-20 101.3 113 52.2
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 6.8e-20 100.9 121 50.4
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.2e-19 100.1 121 58.7
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.5e-19 99.8 121 51.2
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.5e-19 99.8 121 51.2
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.0e-19 99.4 125 57.6
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 4.4e-19 98.2 102 51.0
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 5.8e-19 97.8 126 50.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 5.8e-19 97.8 113 51.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 9.8e-19 97.1 117 47.0
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.7e-18 96.3 118 59.3
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 3.2e-17 92.0 109 47.7
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.2e-16 90.1 120 56.7
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.3e-15 86.7 105 49.5
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 5.1e-15 84.7 108 50.0
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.1e-14 83.6 120 49.2
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.5e-14 83.2 115 48.7
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 7.3e-14 80.9 127 43.3
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.5e-14 80.5 120 46.7
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.6e-13 79.7 120 46.7
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.6e-13 78.6 107 43.9
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 3.6e-13 78.6 107 47.7
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 3.6e-13 78.6 153 37.3
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.1e-12 75.5 119 41.2
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.0e-11 72.8 47 74.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.6e-11 72.4 58 67.2
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 5.8e-11 71.2 117 44.4
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.7e-10 69.7 86 43.0
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.2e-09 65.5 108 38.9
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 9.2e-09 63.9 41 68.3
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.6e-08 63.2 79 44.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.1e-08 62.8 81 46.9
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.7e-08 62.4 80 46.2
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 3.5e-08 62.0 97 52.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.6e-08 61.6 84 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 1.0e-07 60.5 113 38.1
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.0e-07 60.5 120 37.5
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 3.9e-07 58.5 85 41.2
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.5e-06 53.9 45 55.6
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.5e-06 53.9 45 55.6


User provided reference genes

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