Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 0.0e+00 1246.9 626 100.0
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 5.2e-300 1033.9 635 83.1
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 1.2e-299 1032.7 637 83.4
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.2e-293 1012.7 633 82.9
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 8.3e-290 1000.0 635 81.1
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 1.6e-288 995.7 634 81.2
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 8.6e-287 989.9 632 80.4
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 2.0e-283 978.8 642 79.3
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 3.5e-280 968.0 633 79.9
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 6.6e-279 963.8 644 78.6
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 1.2e-277 959.5 644 78.0
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.6e-277 959.1 644 77.3
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 5.8e-275 950.7 645 77.8
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 3.0e-271 938.3 632 77.5
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 5.1e-271 937.6 644 76.1
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 1.6e-269 932.6 645 75.5
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 7.1e-257 890.6 638 73.0
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.2e-256 889.8 633 74.1
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.9e-249 865.9 639 72.0
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 3.9e-247 858.2 644 70.7
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 3.3e-222 775.4 637 65.9
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 2.2e-221 772.7 543 72.7
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 2.4e-220 769.2 635 65.4
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 2.6e-219 765.8 578 68.0
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 8.5e-218 760.8 629 63.6
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.2e-216 756.9 543 70.5
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 2.1e-216 756.1 638 63.3
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 3.6e-216 755.4 527 72.1
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.6e-216 755.4 518 72.8
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 7.9e-216 754.2 641 62.6
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 7.9e-216 754.2 629 63.3
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 1.4e-215 753.4 518 72.8
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.8e-215 753.1 637 63.6
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 2.3e-215 752.7 634 63.9
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 5.1e-215 751.5 646 63.5
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 8.8e-215 750.7 644 62.7
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 2.5e-214 749.2 595 65.7
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.3e-214 748.4 643 63.3
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.3e-213 746.9 614 65.1
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.3e-213 746.9 635 62.8
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 1.7e-213 746.5 636 63.5
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.7e-213 746.5 641 62.9
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 1.7e-213 746.5 632 63.8
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 8.2e-213 744.2 644 61.5
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 8.2e-213 744.2 629 62.3
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.4e-212 742.7 635 62.7
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 3.1e-212 742.3 668 61.2
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 4.1e-212 741.9 639 62.9
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 6.9e-212 741.1 652 62.0
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.9e-212 741.1 634 63.1
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.9e-212 741.1 642 62.8
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 9.1e-212 740.7 635 63.5
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 1.2e-211 740.3 590 65.3
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 4.5e-211 738.4 518 71.6
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 7.7e-211 737.6 621 64.3
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 1.0e-210 737.3 642 62.8
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 2.2e-210 736.1 569 67.7
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.5e-210 734.2 585 65.8
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 8.5e-210 734.2 483 75.2
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 1.1e-209 733.8 610 63.4
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 3.2e-209 732.3 638 62.1
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 5.5e-209 731.5 698 59.3
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 5.5e-209 731.5 633 61.6
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.7e-208 729.2 527 69.8
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 4.7e-208 728.4 582 65.8
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.1e-208 728.0 650 61.2
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.9e-208 727.6 634 61.8
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.0e-207 727.2 618 63.6
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.3e-207 726.1 630 62.2
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 3.0e-207 725.7 640 61.4
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 8.8e-207 724.2 613 62.6
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 2.6e-206 722.6 632 61.7
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 5.7e-206 721.5 639 62.0
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 9.7e-206 720.7 639 61.3
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.8e-205 719.2 525 69.1
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 6.3e-205 718.0 612 64.5
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 6.3e-205 718.0 632 61.6
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 6.3e-205 718.0 523 69.0
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.1e-204 717.2 497 70.4
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.1e-204 717.2 652 61.0
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 1.4e-204 716.8 520 68.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.8e-204 716.5 526 68.1
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.4e-204 716.1 635 61.6
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 3.1e-204 715.7 520 68.7
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 3.1e-204 715.7 519 69.0
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 9.1e-204 714.1 543 66.3
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.2e-203 713.8 689 56.6
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 2.6e-203 712.6 534 67.6
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 3.5e-203 712.2 525 67.0
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 5.0e-202 708.4 648 59.6
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 6.5e-202 708.0 529 68.8
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.5e-201 706.8 635 60.3
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 2.5e-201 706.1 584 63.2
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 9.4e-201 704.1 525 67.8
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.6e-200 703.4 625 60.0
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 2.3e-199 699.5 657 59.2
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 3.0e-199 699.1 464 73.5
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 6.7e-199 698.0 633 60.7
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 4.4e-198 695.3 519 67.6
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.8e-197 692.6 636 60.4
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 8.2e-197 691.0 517 66.7
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 9.1e-196 687.6 540 64.8
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 2.7e-195 686.0 605 60.3
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.5e-195 685.6 607 60.1
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 4.5e-195 685.3 617 60.0
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 8.5e-194 681.0 517 66.5
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 3.2e-193 679.1 587 61.8
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 1.6e-192 676.8 642 58.7
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.1e-192 676.4 573 60.4
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.0e-191 672.5 581 62.1
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.1e-188 664.1 628 58.1
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.4e-188 662.9 462 71.4
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.4e-188 662.9 630 58.1
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 5.4e-188 661.8 691 54.8
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 1.2e-187 660.6 498 67.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 1.6e-187 660.2 584 62.3
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 1.7e-186 656.8 632 56.6
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 6.5e-186 654.8 484 68.4
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 8.8e-183 644.4 572 58.7
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.3e-181 640.6 469 68.0
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 4.9e-181 638.6 460 67.0
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.0e-178 630.9 544 61.4
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 2.1e-176 623.2 442 71.7
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.4e-175 620.5 503 63.2
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.3e-170 603.2 597 58.6
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.3e-170 603.2 604 57.1
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 4.0e-167 592.4 590 53.7
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.5e-166 590.5 623 54.6
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 5.4e-164 582.0 391 72.9
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 7.3e-161 571.6 441 66.9
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.2e-158 564.3 591 50.8
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.0e-158 563.5 504 59.1
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.4e-157 558.5 550 58.0
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 5.4e-156 555.4 474 62.0
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 6.8e-151 538.5 380 76.6
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 6.8e-151 538.5 662 49.7
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.4e-150 536.2 640 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.1e-148 529.3 507 52.7
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 7.1e-148 528.5 625 47.2
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.1e-140 504.6 372 69.9
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 7.1e-140 501.9 512 53.3
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.5e-137 494.2 517 51.8
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.9e-137 493.8 612 50.2
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.1e-131 473.8 343 70.8
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 6.0e-131 472.2 462 55.8
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.7e-130 468.8 344 70.1
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 4.8e-128 462.6 546 48.7
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.1e-124 451.4 318 69.2
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 1.5e-121 441.0 340 63.5
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 3.8e-109 399.8 405 57.8
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 1.0e-101 375.2 235 75.3
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 5.0e-93 346.3 369 55.0
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 6.1e-83 312.8 220 68.2
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.3e-72 278.5 260 61.5
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-69 267.7 220 62.3
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 1.2e-59 235.3 171 68.4
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 6.4e-56 223.0 296 47.3
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 6.8e-50 203.0 500 32.4
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 1.3e-48 198.7 191 55.0
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 4.1e-47 193.7 142 67.6
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 4.1e-47 193.7 149 65.1
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 5.4e-47 193.4 105 87.6
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 9.2e-47 192.6 145 64.1
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 2.3e-45 188.0 678 24.9
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-44 185.3 141 66.0
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.1e-42 179.1 184 50.5
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 1.5e-41 175.3 153 62.1
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 8.3e-40 169.5 132 63.6
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 9.2e-39 166.0 654 25.2
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 2.6e-33 147.9 120 62.5
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 1.2e-25 122.5 77 72.7
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.4e-25 120.6 65 86.2
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 7.6e-25 119.8 69 76.8
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 2.9e-24 117.9 112 58.9
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 3.8e-24 117.5 234 40.2
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 4.9e-24 117.1 131 53.4
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.1e-20 105.9 93 60.2
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 9.6e-20 102.8 53 88.7
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.6e-19 102.1 116 49.1
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 8.1e-19 99.8 62 72.6
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 1.1e-10 72.8 43 81.4
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 1.2e-09 69.3 64 56.2
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 3.2e-07 61.2 41 63.4
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 2.7e-06 58.2 36 66.7
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 6.0e-06 57.0 36 75.0


User provided reference genes

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