Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 9.2e-287 989.6 513 100.0
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.8e-203 712.2 517 73.7
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 2.5e-199 699.1 518 73.0
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 5.5e-199 698.0 513 71.7
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 2.7e-198 695.7 517 71.8
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.7e-198 695.7 521 72.4
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 3.6e-198 695.3 520 71.3
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 8.8e-197 690.6 517 71.6
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 4.4e-196 688.3 513 71.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.7e-195 686.4 518 70.8
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 3.7e-195 685.3 517 72.0
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.2e-193 680.2 515 71.7
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 4.0e-189 665.2 521 68.9
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 4.7e-182 641.7 517 68.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.0e-180 636.3 518 68.0
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.0e-180 636.3 518 68.0
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.0e-180 636.3 518 68.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 4.4e-180 635.2 518 67.0
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 7.8e-161 571.2 519 63.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 3.6e-158 562.4 517 61.5
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 2.4e-101 373.6 568 42.4
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 2.0e-100 370.5 565 43.2
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 5.5e-98 362.5 593 42.0
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.0e-96 358.2 605 40.8
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 5.1e-96 355.9 591 42.5
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 6.7e-96 355.5 556 43.3
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.1e-95 354.8 589 42.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.1e-95 354.8 583 42.9
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.0e-95 354.0 610 39.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 4.4e-95 352.8 594 41.6
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 7.4e-95 352.1 594 41.4
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.4e-95 352.1 565 41.9
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 9.7e-95 351.7 553 44.3
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.3e-94 351.3 594 41.8
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.7e-94 349.7 572 41.1
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.1e-93 348.2 569 42.9
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.4e-93 347.8 557 41.3
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 2.4e-93 347.1 577 41.4
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.3e-93 345.9 573 42.4
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.0e-93 345.5 595 41.8
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 9.1e-93 345.1 552 40.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.6e-92 344.4 595 41.3
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.6e-92 344.4 574 42.0
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.6e-92 343.6 516 43.2
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 4.5e-92 342.8 572 42.8
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 5.9e-92 342.4 556 42.4
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 5.0e-91 339.3 576 41.8
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.1e-90 338.2 578 41.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 7.2e-90 335.5 577 39.2
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.2e-89 334.7 589 41.8
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 4.7e-89 332.8 563 41.4
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 5.2e-88 329.3 568 40.7
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 6.7e-88 328.9 606 37.3
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.7e-88 328.9 637 38.3
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 8.8e-88 328.6 559 40.3
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.3e-87 326.6 588 39.5
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.8e-85 320.9 585 40.2
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 4.1e-85 319.7 568 41.4
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 5.3e-85 319.3 588 38.6
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.2e-84 318.2 563 40.1
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.6e-84 317.8 584 39.4
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.0e-84 317.4 564 39.5
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.0e-84 317.4 586 40.4
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 5.9e-84 315.8 596 38.6
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 5.9e-84 315.8 594 38.9
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 5.9e-84 315.8 601 36.8
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 2.2e-83 313.9 695 35.5
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 3.8e-83 313.2 587 40.4
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.5e-82 310.5 591 39.6
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.2e-82 308.9 572 40.2
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 2.7e-81 307.0 533 40.3
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 3.6e-81 306.6 563 40.1
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 6.3e-78 295.8 539 39.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 5.4e-77 292.7 521 39.0
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.6e-76 291.2 561 40.1
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 7.2e-74 282.3 599 37.6
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 4.7e-73 279.6 618 35.8
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 6.1e-73 279.3 528 39.0
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 8.0e-73 278.9 567 38.3
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.3e-72 277.3 289 54.0
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.3e-72 277.3 568 36.6
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 3.0e-72 276.9 530 37.2
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.0e-72 276.6 576 37.8
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.1e-69 268.5 598 35.1
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-69 268.5 598 35.1
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-69 268.1 598 35.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-69 267.7 598 35.5
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.4e-69 267.3 280 54.3
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.2e-69 265.4 479 40.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 9.2e-69 265.4 501 39.5
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.8e-67 260.0 281 55.2
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.5e-66 258.1 290 51.4
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.5e-66 257.3 583 35.0
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.3e-66 256.5 290 50.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.6e-66 256.1 290 51.0
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 3.0e-64 250.4 593 33.4
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 6.8e-64 249.2 636 32.4
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.0e-63 247.7 523 35.0
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 9.8e-63 245.4 519 36.8
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 2.4e-61 240.7 292 48.6
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.2e-61 240.4 479 38.2
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 4.1e-61 240.0 520 35.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 2.0e-60 237.7 595 32.3
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 2.5e-58 230.7 287 48.1
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.4e-56 224.9 600 33.0
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.3e-56 224.2 439 36.4
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 4.0e-56 223.4 220 56.4
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 8.9e-56 222.2 494 37.4
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-55 221.5 598 32.8
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 5.8e-55 219.5 582 32.6
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.7e-54 216.9 148 83.8
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 9.2e-53 212.2 593 34.1
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.6e-52 211.5 285 44.6
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 7.8e-52 209.1 379 40.4
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.3e-51 207.6 479 35.1
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 7.3e-50 202.6 500 32.4
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.6e-47 194.1 308 39.6
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.2e-45 185.7 267 43.4
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 7.8e-44 182.6 264 43.2
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-43 181.0 264 42.8
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 5.1e-43 179.9 263 43.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.8e-41 174.1 264 43.9
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.8e-41 174.1 463 32.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.3e-38 165.2 345 36.8
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 9.2e-37 159.1 404 33.2
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.7e-33 146.7 485 30.9
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.9e-30 136.7 275 37.5
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.6e-28 131.7 422 30.8
Aa31sc194G50 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.5e-28 130.6 113 65.5
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 2.3e-27 127.9 92 66.3
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.5e-26 125.2 313 28.8
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 1.3e-25 122.1 350 33.1
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-25 121.3 418 29.4
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.8e-25 120.9 157 42.7
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.6e-25 120.6 116 51.7
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-24 118.6 269 35.3
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 8.4e-22 109.4 204 36.3
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.9e-18 98.2 119 41.2
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 1.6e-17 95.1 156 38.5
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 4.8e-17 93.6 283 26.9
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 7.6e-15 86.3 348 28.4
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.3e-14 85.5 130 40.8
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 2.2e-14 84.7 75 62.7
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 8.4e-14 82.8 75 61.3
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.4e-13 82.0 67 70.1
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 1.4e-13 82.0 75 61.3
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 7.1e-13 79.7 319 28.5
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 3.5e-12 77.4 126 39.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 7.9e-12 76.3 100 49.0
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 5.1e-11 73.6 101 44.6
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 8.7e-11 72.8 53 73.6
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 3.3e-10 70.9 52 73.1
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 4.3e-10 70.5 64 59.4
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 9.0e-08 62.8 49 69.4
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.7e-06 58.5 166 31.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.9e-06 57.8 94 33.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.9e-06 57.8 100 34.0
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 6.5e-06 56.6 48 68.8


User provided reference genes

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