Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.2e-254 883.6 846 100.0
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.5e-108 397.5 907 59.5
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 3.1e-106 390.6 891 58.2
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.1e-106 390.2 884 60.0
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.6e-102 378.3 934 55.4
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.1e-98 365.5 886 56.4
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.3e-96 358.6 896 54.4
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 7.2e-95 352.8 882 58.8
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 4.2e-87 327.0 881 56.6
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 3.8e-72 277.3 236 68.2
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.1e-71 275.8 239 66.5
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 5.5e-71 273.5 247 66.4
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.2e-70 272.3 247 65.6
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.8e-70 271.2 232 66.8
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 3.6e-70 270.8 248 66.1
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 4.7e-70 270.4 299 56.9
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 8.0e-70 269.6 239 68.6
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 5.2e-69 266.9 892 55.7
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.3e-67 262.3 242 65.3
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.7e-67 261.9 246 63.8
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.7e-67 261.9 246 63.8
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.7e-67 261.9 243 62.6
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 2.2e-67 261.5 248 60.9
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.2e-67 261.5 246 62.2
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.8e-67 261.2 232 67.2
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.9e-67 260.4 248 61.7
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.3e-67 260.0 247 62.8
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 8.3e-67 259.6 223 67.7
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 8.3e-67 259.6 244 61.1
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 1.4e-66 258.8 222 68.5
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.8e-66 258.5 244 63.9
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.8e-66 258.5 243 62.1
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 3.1e-66 257.7 240 62.1
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 7.0e-66 256.5 243 61.3
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.6e-65 255.4 171 79.5
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.6e-65 255.4 243 62.1
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 2.7e-65 254.6 225 65.8
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.7e-65 254.6 231 64.5
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 3.5e-65 254.2 240 64.6
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 4.5e-65 253.8 218 65.6
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 5.9e-65 253.4 231 64.9
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 7.8e-65 253.1 297 55.6
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 7.8e-65 253.1 234 61.1
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.0e-64 252.7 238 62.2
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.0e-64 252.7 299 54.8
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.0e-64 252.7 251 60.6
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.3e-64 252.3 232 64.2
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.3e-64 252.3 249 61.0
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 1.7e-64 251.9 222 65.3
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 3.8e-64 250.8 243 63.4
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 5.0e-64 250.4 233 64.4
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 5.0e-64 250.4 222 63.5
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 5.0e-64 250.4 243 59.7
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 8.6e-64 249.6 244 60.2
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.1e-63 249.2 230 63.5
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.5e-63 248.1 244 61.9
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 3.3e-63 247.7 231 64.5
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 5.6e-63 246.9 236 62.3
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 5.6e-63 246.9 230 64.3
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 7.3e-63 246.5 251 59.4
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 9.5e-63 246.1 207 63.3
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 9.5e-63 246.1 246 61.0
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 9.5e-63 246.1 243 62.6
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.6e-62 245.4 214 65.4
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.6e-62 245.4 242 62.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.8e-62 244.6 254 60.6
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 2.8e-62 244.6 243 61.7
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 3.6e-62 244.2 254 60.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 3.6e-62 244.2 244 61.5
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.7e-62 243.8 227 63.0
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 6.1e-62 243.4 222 64.4
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 6.1e-62 243.4 168 75.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 6.1e-62 243.4 233 62.2
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 8.0e-62 243.0 238 60.5
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 8.0e-62 243.0 246 58.9
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 8.0e-62 243.0 298 52.0
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.0e-61 242.7 248 61.3
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.0e-61 242.7 231 63.6
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.0e-61 242.7 257 57.2
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.4e-61 242.3 242 61.2
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.3e-61 241.5 209 65.6
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.0e-61 241.1 145 86.2
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 6.8e-61 240.0 261 58.2
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 8.9e-61 239.6 235 60.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 8.9e-61 239.6 242 60.7
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 3.4e-60 237.7 258 57.8
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 3.4e-60 237.7 910 54.0
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 5.7e-60 236.9 157 77.7
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.7e-59 235.3 239 60.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.7e-59 235.3 247 60.7
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 4.9e-59 233.8 234 63.2
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.2e-58 231.1 230 61.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 9.2e-58 229.6 246 58.1
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.6e-57 228.8 152 79.6
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.6e-57 228.8 325 47.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.3e-56 225.7 243 56.0
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 2.3e-56 224.9 186 66.1
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 6.6e-56 223.4 245 57.1
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.5e-55 222.2 261 56.7
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-55 221.5 231 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 5.6e-55 220.3 236 55.1
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 5.6e-55 220.3 140 79.3
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 7.3e-55 219.9 231 62.3
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.6e-54 218.8 234 57.3
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.6e-54 218.8 234 57.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 8.0e-54 216.5 209 60.3
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 8.9e-53 213.0 258 52.3
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.4e-50 204.9 131 76.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 1.3e-48 199.1 134 75.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.2e-46 192.6 171 62.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.1e-46 191.8 159 64.8
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 1.4e-45 189.1 221 50.2
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 9.9e-44 183.0 202 55.9
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 7.8e-41 173.3 159 60.4
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.3e-40 172.6 206 54.4
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-37 162.9 125 70.4
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 6.8e-37 160.2 185 51.4
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 4.3e-31 141.0 134 60.4
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.8e-29 135.6 170 52.9
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.6e-28 131.7 150 54.7
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 3.8e-27 127.9 182 47.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 3.0e-24 118.2 129 51.9
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.1e-23 116.3 159 47.2
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.6e-17 95.9 77 64.9
Carub.0004s1024 Capsella rubella HOM05D005166 ORTHO05D006120 5.1e-16 90.9 711 53.0
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.9e-15 89.0 76 60.5
CARHR122470 Cardamine hirsuta HOM05D005166 ORTHO05D006120 9.6e-15 86.7 696 50.1
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.3e-14 86.3 57 75.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 6.7e-08 63.9 50 66.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 4.3e-07 61.2 139 31.7
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 6.2e-06 57.4 55 56.4
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 6.2e-06 57.4 55 56.4


User provided reference genes

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