Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.2e-65 253.1 135 100.0
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 4.4e-47 191.4 132 77.3
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 3.7e-46 188.3 131 77.9
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 2.4e-45 185.7 132 72.0
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-44 183.3 137 75.2
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.6e-44 181.4 137 75.2
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 7.8e-44 180.6 129 76.0
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 3.9e-43 178.3 133 73.7
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.1e-42 176.8 137 73.0
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 3.3e-42 175.3 137 72.3
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 5.6e-42 174.5 139 71.9
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 5.6e-42 174.5 139 71.9
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 7.3e-42 174.1 138 72.5
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 9.5e-42 173.7 132 73.5
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 1.2e-41 173.3 134 71.6
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 1.6e-41 172.9 134 72.4
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 4.7e-41 171.4 136 72.1
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 8.1e-41 170.6 137 70.8
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 8.1e-41 170.6 130 72.3
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 2.3e-40 169.1 132 69.7
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 4.0e-40 168.3 137 70.8
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 4.0e-40 168.3 137 70.8
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 5.2e-40 167.9 139 69.8
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 8.9e-40 167.2 131 68.7
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.5e-39 166.4 134 70.1
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.5e-39 166.4 134 70.1
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 5.8e-39 164.5 132 68.2
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 5.8e-39 164.5 132 68.2
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.8e-38 161.8 136 69.9
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.1e-37 160.2 138 69.6
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 7.8e-36 154.1 130 64.6
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 3.0e-35 152.1 137 65.0
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 3.3e-34 148.7 137 66.4
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 4.3e-34 148.3 116 69.8
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 9.0e-16 87.4 113 45.1
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 2.6e-15 85.9 132 42.4
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 7.6e-15 84.3 111 46.8
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 4.2e-13 78.6 119 42.9
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 9.3e-13 77.4 110 41.8
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 3.5e-12 75.5 101 46.5
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 7.9e-12 74.3 89 50.6
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.1e-11 71.6 116 43.1
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.7e-11 71.2 116 43.1
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 8.7e-11 70.9 118 42.4
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.7e-11 70.9 104 43.3
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.7e-11 70.9 104 42.3
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 8.7e-11 70.9 104 42.3
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.1e-10 70.5 84 44.0
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.5e-10 70.1 88 47.7
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-10 70.1 116 42.2
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.5e-10 69.3 132 40.9
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.3e-10 68.9 112 40.2
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.3e-10 68.6 81 48.1
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 5.6e-10 68.2 84 46.4
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 5.6e-10 68.2 108 43.5
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 7.4e-10 67.8 84 46.4
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.1e-09 66.2 112 40.2
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 4.8e-09 65.1 87 43.7
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 6.2e-09 64.7 85 49.4
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 6.2e-09 64.7 84 46.4
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 6.2e-09 64.7 124 37.1
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 1.1e-08 63.9 85 42.4
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 1.1e-08 63.9 102 42.2
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.1e-08 63.9 114 42.1
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 1.1e-08 63.9 106 42.5
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 1.8e-08 63.2 105 43.8
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 1.8e-08 63.2 139 32.4
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.8e-08 63.2 114 37.7
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.4e-08 62.8 80 46.2
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 3.1e-08 62.4 112 34.8
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 4.0e-08 62.0 139 32.4
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 5.3e-08 61.6 84 41.7
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 9.0e-08 60.8 80 45.0
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 9.0e-08 60.8 80 45.0
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 9.0e-08 60.8 86 45.3
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.2e-07 60.5 83 45.8
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.2e-07 60.5 106 43.4
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.5e-07 60.1 106 42.5
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.5e-07 60.1 87 41.4
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.0e-07 59.7 93 46.2
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 4.5e-07 58.5 130 30.8
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 4.5e-07 58.5 80 43.8
Migut.N00891 Erythranthe guttata HOM05D004233 ORTHO05D003507 4.5e-07 58.5 118 39.0
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 5.8e-07 58.2 104 34.6
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 5.8e-07 58.2 109 39.4
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 5.8e-07 58.2 80 43.8
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.8e-07 58.2 84 40.5
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.8e-07 58.2 84 40.5
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.8e-07 58.2 84 40.5
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 7.6e-07 57.8 130 33.1
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 1.0e-06 57.4 86 40.7
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 1.3e-06 57.0 85 40.0
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 1.3e-06 57.0 105 36.2
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.3e-06 57.0 96 36.5
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 1.3e-06 57.0 109 35.8
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 1.7e-06 56.6 86 40.7
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.7e-06 56.6 84 44.0
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 2.2e-06 56.2 75 41.3
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 2.2e-06 56.2 107 37.4
Manes.02G121400 Manihot esculenta HOM05D004233 ORTHO05D003507 2.2e-06 56.2 114 36.8
arahy.Tifrunner.gnm1.ann1.0452KN Arachis hypogaea HOM05D010371 ORTHO05D003507 2.9e-06 55.8 109 38.5
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 3.8e-06 55.5 81 43.2
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 4.9e-06 55.1 105 42.9
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 4.9e-06 55.1 85 42.4
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 4.9e-06 55.1 82 41.5
Phvul.006G065200 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 6.5e-06 54.7 88 39.8
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 6.5e-06 54.7 90 40.0
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 6.5e-06 54.7 86 38.4
Glyma.18G065800 Glycine max HOM05D010371 ORTHO05D003507 8.4e-06 54.3 105 41.0


User provided reference genes

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