Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 4.3e-215 751.1 403 100.0
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.4e-184 649.8 407 88.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.4e-184 649.8 412 87.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.3e-184 649.0 408 88.5
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.5e-183 646.4 406 88.2
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.1e-181 640.2 377 92.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.0e-179 633.6 408 87.0
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.3e-176 622.5 400 87.2
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 8.2e-174 614.0 404 84.7
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 9.1e-173 610.5 409 85.8
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 4.5e-172 608.2 408 85.3
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-171 607.1 408 85.3
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-171 606.7 406 85.2
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-171 606.7 406 85.2
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.9e-171 605.5 409 85.3
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 2.5e-170 602.4 406 84.5
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 3.2e-170 602.1 409 85.3
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-168 597.0 406 82.3
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 6.8e-168 594.3 378 88.4
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.0e-167 592.8 376 84.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.7e-163 579.7 378 82.3
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 2.5e-162 575.9 411 78.1
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 7.2e-162 574.3 402 79.4
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.8e-161 572.4 402 79.1
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.6e-161 572.0 388 80.9
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 4.7e-161 571.6 407 77.4
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.0e-160 570.5 402 78.9
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 5.2e-160 568.2 373 81.8
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 8.8e-160 567.4 390 79.5
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 8.8e-160 567.4 396 79.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.2e-159 567.0 399 77.9
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.2e-159 567.0 392 79.6
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.2e-159 567.0 400 78.8
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.5e-159 566.6 377 84.4
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.5e-159 566.6 403 77.7
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.0e-159 566.2 410 76.3
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 3.4e-159 565.5 375 81.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 4.4e-159 565.1 400 78.0
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 5.7e-159 564.7 377 81.2
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.2e-158 562.8 372 80.4
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.8e-158 562.4 392 79.1
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.7e-158 562.0 377 84.6
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 3.7e-158 562.0 408 74.8
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 4.9e-158 561.6 385 79.0
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 6.3e-158 561.2 412 74.8
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 8.3e-158 560.8 386 78.5
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.4e-157 560.1 396 78.3
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 4.1e-157 558.5 372 81.7
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.1e-157 558.5 395 77.0
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 5.4e-157 558.1 424 72.6
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 7.0e-157 557.8 385 78.4
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.7e-156 555.8 375 81.9
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 3.5e-156 555.4 385 77.7
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.5e-156 555.1 413 74.3
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 5.9e-156 554.7 385 78.7
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 7.7e-156 554.3 387 77.5
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.7e-155 553.1 385 77.4
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 3.8e-155 552.0 400 77.0
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 5.0e-155 551.6 415 75.2
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 5.0e-155 551.6 403 74.7
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 6.6e-155 551.2 392 77.6
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 8.6e-155 550.8 398 75.6
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.9e-154 549.7 407 74.9
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.5e-154 549.3 388 75.3
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.3e-154 547.7 409 74.1
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.3e-154 547.7 409 74.1
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 9.5e-154 547.4 400 75.2
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.2e-153 547.0 375 78.9
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.6e-153 546.6 404 76.0
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.8e-153 545.8 388 78.1
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.6e-153 545.4 415 73.3
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 3.6e-153 545.4 404 75.2
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-153 545.0 409 73.8
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-153 545.0 409 73.8
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 4.7e-153 545.0 343 83.4
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 4.7e-153 545.0 375 78.4
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 4.7e-153 545.0 375 78.9
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.4e-152 543.5 388 76.8
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.8e-152 543.1 416 74.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 5.2e-152 541.6 389 75.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.2e-152 541.6 386 77.2
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.0e-151 539.7 392 75.0
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 2.0e-151 539.7 388 76.3
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 2.0e-151 539.7 398 75.6
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.6e-151 539.3 392 75.0
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 3.4e-151 538.9 412 74.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.4e-151 538.9 409 73.3
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 5.7e-151 538.1 371 80.1
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 7.5e-151 537.7 406 74.1
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.9e-150 535.8 386 75.1
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.4e-149 533.5 371 77.1
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.4e-149 533.5 371 77.1
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 3.2e-149 532.3 404 74.5
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 5.4e-149 531.6 408 73.0
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 9.2e-149 530.8 397 74.3
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-148 530.4 351 85.5
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.2e-148 530.4 336 83.3
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 3.5e-148 528.9 392 73.5
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 7.8e-148 527.7 413 71.2
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.7e-147 526.6 367 77.4
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.5e-146 523.5 398 71.4
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.5e-146 522.7 388 73.5
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.5e-146 522.7 385 73.8
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.5e-146 522.7 343 80.5
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 5.6e-146 521.5 354 82.8
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.2e-145 520.4 386 74.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.1e-145 519.6 368 76.1
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 3.6e-145 518.8 388 72.7
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.0e-144 517.3 400 70.8
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 9.8e-143 510.8 395 72.4
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.7e-140 502.7 418 67.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 2.3e-139 499.6 306 85.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 3.0e-139 499.2 316 83.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 8.6e-139 497.7 391 70.1
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 5.6e-138 495.0 306 83.7
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 9.5e-138 494.2 348 74.4
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.8e-137 492.7 377 71.4
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 4.0e-136 488.8 306 83.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.2e-134 483.0 385 70.6
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 9.2e-133 477.6 324 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 8.6e-131 471.1 342 71.6
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.8e-128 461.5 335 72.5
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 2.2e-126 456.4 415 67.5
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.0e-123 447.6 426 61.7
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.0e-115 419.5 281 81.5
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 6.6e-115 418.3 386 65.0
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 3.3e-114 416.0 255 87.1
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.0e-112 409.1 342 65.2
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.3e-110 404.1 357 66.4
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.2e-108 397.5 340 62.4
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.5e-106 390.6 304 67.4
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 9.6e-98 361.3 360 56.4
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.8e-89 332.4 207 85.5
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 8.5e-86 321.6 207 85.5
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 8.5e-86 321.6 207 85.5
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.0e-71 273.9 175 80.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.7e-65 254.2 374 47.9
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.6e-63 247.7 302 46.4
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.3e-57 228.0 302 44.7
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.5e-55 219.5 129 84.5
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.9e-54 216.9 337 42.1
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 7.2e-53 212.2 163 72.4
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.7e-49 199.9 187 62.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 4.5e-47 193.0 233 54.1
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.6e-36 157.9 158 56.3
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.6e-36 156.8 222 47.3
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 3.7e-33 146.7 125 65.6
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 6.0e-31 139.4 80 88.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.8e-27 127.9 111 63.1
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 3.7e-17 93.6 77 66.2
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 4.6e-15 86.7 48 91.7
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.5e-13 81.6 42 90.5
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 5.6e-13 79.7 86 55.8
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 9.5e-13 79.0 90 51.1
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 4.7e-12 76.6 85 60.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.9e-08 64.7 43 74.4


User provided reference genes

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