Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1997.2 1077 100.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1540.4 1040 81.2
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1539.6 1040 81.0
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1539.2 1041 80.9
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1535.8 1040 80.5
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1533.9 1040 80.5
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1528.5 1041 80.6
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1528.1 1040 80.3
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1523.8 1041 80.3
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1519.6 1041 80.1
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1504.6 1037 79.2
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1501.9 1038 79.2
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1501.5 1038 79.2
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1478.0 1084 75.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1471.1 1073 76.4
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1389.4 1038 73.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1322.0 1036 69.2
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1311.2 1049 68.1
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1303.1 1037 67.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1302.0 1037 67.6
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1296.2 1037 67.7
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1295.4 1040 68.6
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1292.7 1038 68.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1289.6 1038 67.3
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1286.2 1043 67.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1284.6 1045 67.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1283.9 1040 66.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1283.1 1037 67.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1282.3 1045 68.2
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1282.3 1052 66.8
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1278.5 1044 66.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1276.2 1072 67.0
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1275.8 1037 66.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 1042 67.3
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1270.4 1040 66.2
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1267.7 1042 67.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1037 67.0
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1266.1 1037 67.5
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1265.8 1037 67.3
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1265.0 1045 66.4
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1263.8 1040 68.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1262.3 1043 65.6
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1257.7 1053 65.9
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1255.7 1037 66.2
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1254.2 1040 67.1
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1253.0 1041 66.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1251.5 1046 66.6
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1250.0 987 67.6
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1248.8 1036 66.3
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1248.0 1041 66.0
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1245.7 1042 66.1
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1242.6 1038 65.6
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1241.5 1039 64.9
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1241.1 1040 64.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1237.2 1041 65.3
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1236.5 1080 63.3
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1234.6 1035 67.1
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1234.2 1025 66.5
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1233.0 1041 66.3
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1230.7 1058 63.3
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1230.3 1049 64.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1227.2 1037 65.8
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1226.5 1037 64.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1223.8 1042 63.4
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1221.8 1044 64.4
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1221.8 1044 64.4
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1218.0 1105 61.6
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1214.1 1052 62.8
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1213.4 1039 64.3
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1211.8 1043 63.5
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1210.7 1045 65.6
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1209.5 1042 62.7
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1206.4 1036 64.7
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1205.7 1038 64.4
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1203.3 1040 63.6
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1198.3 1076 63.4
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1196.8 1049 63.3
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1193.7 1046 61.7
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1190.6 1039 63.3
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1184.1 1056 62.6
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1177.5 1040 61.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1177.5 1037 62.1
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1172.1 966 64.4
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1169.8 960 64.4
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1169.8 1038 62.0
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1165.2 1044 62.4
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1163.7 995 63.2
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1162.9 1044 62.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1162.5 1035 63.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1158.7 1038 61.6
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1155.6 915 69.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1151.3 1037 62.8
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1141.7 1042 60.7
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1141.7 968 62.7
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1136.3 1008 61.6
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1120.5 1041 59.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1115.9 1056 59.2
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1114.4 970 61.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1105.9 815 72.5
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1081.6 1052 58.0
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 7.4e-312 1074.3 875 66.2
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 3.2e-310 1068.5 812 71.7
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 2.4e-305 1052.4 1102 54.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 9.9e-299 1030.4 809 69.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.5e-294 1016.5 1041 55.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 9.9e-291 1003.8 1047 54.0
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.1e-276 955.7 990 52.4
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.5e-275 953.4 1036 51.4
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 5.4e-273 944.9 972 52.9
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.3e-271 939.5 725 69.8
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.8e-269 932.6 1027 52.0
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 9.3e-265 917.5 854 59.4
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.3e-254 882.5 976 50.9
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.5e-243 845.5 763 62.0
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 7.2e-241 838.2 581 77.8
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 8.5e-234 814.7 669 67.0
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.1e-228 796.2 1035 50.5
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.0e-218 764.6 1002 44.4
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.5e-209 732.3 630 63.3
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.3e-207 726.9 662 61.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 3.2e-196 689.9 991 45.9
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 7.3e-193 678.7 710 52.8
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.5e-179 633.3 615 55.3
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 7.3e-177 625.5 649 55.8
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.1e-170 602.8 557 59.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.2e-157 560.8 407 74.7
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.5e-153 548.1 583 52.0
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.0e-138 497.3 1072 32.8
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 5.7e-137 493.0 638 44.2
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 5.9e-126 456.4 992 31.7
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 5.1e-122 443.4 602 46.7
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 8.8e-114 416.0 961 30.6
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 8.8e-106 389.4 364 59.9
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.8e-104 384.4 386 58.3
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 3.7e-104 384.0 289 69.9
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.7e-96 358.6 282 67.7
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.1e-95 354.0 361 54.8
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 9.8e-89 332.8 588 38.8
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.2e-88 331.6 238 76.5
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 5.4e-87 327.0 297 60.9
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.5e-86 324.3 424 43.2
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 3.0e-85 321.2 282 61.3
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.3e-82 311.6 579 37.8
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.3e-82 311.6 280 62.9
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 3.1e-82 311.2 283 59.4
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 6.8e-82 310.1 573 39.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.7e-72 277.7 302 55.6
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 5.1e-69 267.3 401 43.6
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 4.3e-68 264.2 418 48.1
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 4.7e-67 260.8 446 46.0
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 4.9e-64 250.8 192 69.3
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.7e-61 242.3 614 32.7
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-61 242.3 260 56.9
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 9.6e-60 236.5 245 58.8
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 9.6e-60 236.5 262 50.0
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 4.9e-56 224.2 265 48.7
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 7.8e-54 216.9 237 47.7
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.6e-52 210.7 228 54.4
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-50 206.1 301 42.9
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.3e-45 189.5 339 41.6
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.7e-45 186.8 166 63.3
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 4.3e-44 184.5 134 67.9
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 4.8e-43 181.0 202 50.0
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.8e-42 179.1 157 63.7
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 9.0e-42 176.8 93 94.6
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.3e-40 172.9 411 38.4
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 4.5e-33 147.9 124 67.7
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 5.8e-33 147.5 236 39.4
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.0e-32 146.7 176 52.8
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 2.5e-31 142.1 136 57.4
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.7e-29 134.0 75 90.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.7e-29 134.0 75 90.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.1e-27 129.0 159 50.3
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.5e-25 122.9 193 47.2
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 8.5e-24 117.1 171 42.7
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 5.5e-23 114.4 121 50.4
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 2.3e-21 109.0 75 68.0
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 2.6e-17 95.5 66 69.7
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.3e-16 93.2 163 38.7
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.9e-15 89.4 108 49.1
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 3.4e-09 68.6 35 91.4
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 7.9e-06 57.4 102 39.2


User provided reference genes

Program Settings